Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35190 300 / 5e-104 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT2G28305 278 / 6e-96 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT2G37210 277 / 3e-95 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT3G53450 273 / 2e-93 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT5G06300 260 / 1e-88 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT2G35990 240 / 1e-80 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT5G11950 228 / 5e-76 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT5G03270 218 / 1e-71 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G26140 152 / 6e-47 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1) AT1G50575 46 / 8e-06 Putative lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248900 [exp] 379 / 1e-135 AT4G35190 297 / 7e-103 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.004G181800 [exp] 323 / 4e-113 AT4G35190 361 / 3e-128 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.009G141500 [exp] 320 / 6e-112 AT4G35190 357 / 2e-126 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.016G090500 [exp] 282 / 5e-97 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.004G212200 [exp] 280 / 2e-96 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.009G010800 [exp] 280 / 3e-96 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.006G127400 [exp] 278 / 1e-95 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.002G024000 [exp] 255 / 1e-86 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.016G072000 [exp] 253 / 7e-86 AT5G06300 323 / 1e-113 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022638 [exp] 322 / 2e-112 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10003335 [exp] 320 / 4e-112 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10025117 [exp] 318 / 4e-111 AT4G35190 373 / 1e-132 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10023967 [exp] 298 / 8e-103 AT4G35190 358 / 1e-126 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 293 / 1e-101 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10021462 [exp] 293 / 2e-101 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 279 / 9e-96 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10002226 [exp] 275 / 3e-94 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10023190 [exp] 260 / 1e-88 AT2G37210 364 / 6e-130 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10012436 [exp] 259 / 4e-88 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [poplar] [flax] SLOG PF03641 [poplar] [flax] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Potri.002G012500.2 pacid=42778409 polypeptide=Potri.002G012500.2.p locus=Potri.002G012500 ID=Potri.002G012500.2.v4.1 annot-version=v4.1 ATGGAGGATGGTAAAGTAGCGGTTAAATCATCGAAATTTAAAAGGGTTTGTGTGTTTTGTGGTAGCAGTACTGGCAAAAGAGATTGCTACCGTGATGCTG CTCTTGAACTTGGCCAAGAATTGGTCTCAAGGAGTCTGGATCTTGTTTATGGTGGAGGCAGTGTTGGACTAATGGGATTAGTTTCTCAGGAGGTTCATCG AGGTGGAGGACATGTCATAGGAGTCATTCCTAAAACTCTGATGAGCAAAGAGCTGACAGGAGAAACAGTAGGGGAGGTCAGGCCAGTAGCAGACATGCAT CAAAGAAAAGCTGAGATGGCCCGTCATTCTGACTGTTTTATTGCCTTACCAGGTGGGTATGGAACCTTGGAGGAGTTATTGGAAGTCATCACATGGGCCC AACTTGGCATCCACGACAAGCCCGTGGGTTTGCTTAATGTGGATGGCTACTACAATTATCTGCTGACTTTCATAGACAAGGCAGTGGATGATGGGTTCAT CATGCCCTCTCAGCGCAGTATTATTGTCTCTGCCCCAAATGCTAAAGAGCTTGTTCAGAAACTTGAGGAATATGTGCCTGTGCATGATGGGGTTGTAGCC AAGGCTAAGTGGGAGGCAGAACAGATGGAGCTTAATGCATCTTTGCAAACTGAAATTGCTCGTTAA
AA sequence Show only first row Show all	>Potri.002G012500.2 pacid=42778409 polypeptide=Potri.002G012500.2.p locus=Potri.002G012500 ID=Potri.002G012500.2.v4.1 annot-version=v4.1 MEDGKVAVKSSKFKRVCVFCGSSTGKRDCYRDAALELGQELVSRSLDLVYGGGSVGLMGLVSQEVHRGGGHVIGVIPKTLMSKELTGETVGEVRPVADMH QRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIMPSQRSIIVSAPNAKELVQKLEEYVPVHDGVVA KAKWEAEQMELNASLQTEIAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.002G012500 [exp]	0	1
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G021000 [exp]	2.44	0.7519
AT5G05710			Pleckstrin homology (PH) domai...		Potri.008G066700 [exp]	9.48	0.6544
AT2G39725			LYR family of Fe/S cluster bio...		Potri.001G018100 [exp]	10.19	0.7205
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Potri.019G048600 [exp]	14.89	0.6813
AT3G06760			Drought-responsive family prot...		Potri.011G057200 [exp]	17.88	0.6709
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.005G025800 [exp]	21.00	0.6739	RALFL23.2
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Potri.006G083300 [exp]	23.74	0.6171
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.010G237400 [exp]	24.49	0.7120	NFU4.2
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	25.45	0.6331
AT4G39860			unknown protein		Potri.005G076000 [exp]	28.16	0.6124

Compare expression of checked genes

Potri.002G012500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.