Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20440 50 / 2e-06 AtCOR47, RD17, COR47 cold-regulated 47 (.1) AT3G50980 47 / 5e-06 XERO1 dehydrin xero 1 (.1) AT1G20450 47 / 2e-05 LTI45, ERD10, LTI29 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) AT5G66400 46 / 2e-05 ATDI8, RAB18 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2) AT3G50970 43 / 0.0002 XERO2, LTI30 LOW TEMPERATURE-INDUCED 30, dehydrin family protein (.1) AT1G76180 43 / 0.0002 ERD14 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248100 [exp] 82 / 3e-17 AT1G76180 49 / 4e-07 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021827 [exp] 53 / 1e-07 AT1G76180 106 / 1e-28 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) Lus10034568 [exp] 52 / 4e-07 AT1G20450 102 / 5e-27 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) Lus10021240 [exp] 50 / 2e-06 AT1G76180 81 / 6e-19 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) Lus10005652 [exp] 49 / 2e-06 AT1G20450 81 / 1e-18 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) Lus10014280 [exp] 42 / 0.0003 AT3G50980 96 / 3e-26 dehydrin xero 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00257 [poplar] [flax] Dehydrin Dehydrin
Representative CDS sequence Show only first row Show all	>Potri.002G013200.2 pacid=42779909 polypeptide=Potri.002G013200.2.p locus=Potri.002G013200 ID=Potri.002G013200.2.v4.1 annot-version=v4.1 ATGGCTGGGGTAAATAAGAGCCACGAGTATGAGACCAAGACCAGTGCTGGTGAAGAGAGTGGTGCTACTGAGACCAAGGATCGTGGGTTGTTTGGTTTCA TGGGGAAGAAAAAAGAAGAGGTGCCTGCCACTGAGTATGAAGAGAAAATTCATCGATCAGACAACAGTTATCCTGGTGACGGGGAGAAGAAACATGAGGA TACTACTGTTCCTTCTGACACAGAGACACCCCTTACCCCAGAGAAGAAGAAGAGTTACTTTGAGCAAGCCAAGGACATGATACCAGCATATAAGAAAACT GAAGAGGTTCCTCCTCCGACTGAAGCTGTTTATCCGTCTGAGACACCCCTTACCCCAGAGAAGAAGAAGAGTTACTTTGAGCAAGCCAAGGGCATAATAC CAGCGTATAAAAAAACTGAAGATGGCCCTCCCTCTCCAGCTGAAGCCGCAGTTCATCCCACAGGGACACCCCTTGAACCAGAGAAGAAGAAGAGTTACTT TGAGCAAGCCAAGGACATGATACCAGCATATAAGAAAACTGAAGATTCCCCTCCCTCTCCAGCTGAAGCCGCAGTTCATCCCACAGGGTCACGACCCCTT GAACCAGAGAAGAAGAGTTACTTTGAGCAAGCCAAGGACATGATACCAGCATATAAGAAAACTGAAGATTCCCCTCCCTCTCCAGCTGAAGCCGCAGTTC ATCCCACAGGGTCACGACCCCTTGAACCAGAGAAGAAGAAGAGTTACTTTGAGCAAGCCAAGGACATAATACCAGCATATAAGAAAACTGAAGATTCCCC TCCCTCTCCAACTGAAGCCGCAGGTCATCCCACAGGGTCACGACCCCTTGAACCAGAGAAGAAGAAGAGTTACTTTGAGCAAGCCAAGGAGAGAACACCA GGATTTAAGAAAAGTGAAGAGGTCTCTCCCCGTCCAGCTAAAGCCGCAGCTCATCACACAGAGACACCCCTTGAACCAGAGGAGAAGAAGGGTTTCTTTG AGCAAGCCAAGGAGAGAACACCAGGATTTAAGAAAACTGAAGAGGTCTCTCCCCGTCCAGCTAAAGCCGCAGCTCATCACACAGAGACACCCCTTGAACC AGAGGAGAAGAAGGGTTTCTTTGAGCAAGCCAAGGAGAGAACACCAGGATTTAAGAAAACTGAAGAGGTCTCTCCCCGTCCAGCTAAAGCCGCAGCTCAC CTCACAGAGACACCCCTTGAACCAGAGGAGAAGAAGGGTTTCTTTGACCAAGCCAAGGAGAGAATACCATCACATAAGAAAACTGAAGAGGTCCCTCCCC ATCCAGCTAAATCTGCTTCTAATGAAGGTGCATTTTCTCAGACAGAGACACCCTTTGAACCAGAGGAGAAGAAGGGTTTCCTTGACAAAGTCAAGGAGAA AGTTCCAGCACATAAAACTGAAGAGGTCCCTCCTCCAGCTGAATCTGCATTTTCTCACACAGAGACACCCTTTGAACCAGAGGAAAAGAAGGGTTTCCTT GACAAGGTCAAGGAGAAAGAGCTATCACGGAAGAAAACTGAAGAGGTCCCTCACCCTCCAGCTGCCGCATTTTCTCACACAAATACGCCATCTGAACCGG AAGAGAAGAGGGGTTTTCTCAAGGAGAAAGTGCCAACACATAAGAAAACCGAAGAGTTCCCTTTTCCAGCTAAACCTGCTTATACTGAAGCTGCAGTTTC AAACACAAATACACCCCTTGAACCAGAAGAGAAGAGGGGTTTACTTGACAAAATCAAGGAGAAAATGCCGGGACATAAAAAAACTGAAGAGGTCCCTCCA TCTGAATTTGATTCTACTGAAAATGTAGTTTCCCATAAAGGAGAGCCTATGGTGAAAAAGGGAATGATGGAGAAGATCAAGGAGAAGCTTCCTGGGCACC GCCCCCAAATATGA
AA sequence Show only first row Show all	>Potri.002G013200.2 pacid=42779909 polypeptide=Potri.002G013200.2.p locus=Potri.002G013200 ID=Potri.002G013200.2.v4.1 annot-version=v4.1 MAGVNKSHEYETKTSAGEESGATETKDRGLFGFMGKKKEEVPATEYEEKIHRSDNSYPGDGEKKHEDTTVPSDTETPLTPEKKKSYFEQAKDMIPAYKKT EEVPPPTEAVYPSETPLTPEKKKSYFEQAKGIIPAYKKTEDGPPSPAEAAVHPTGTPLEPEKKKSYFEQAKDMIPAYKKTEDSPPSPAEAAVHPTGSRPL EPEKKSYFEQAKDMIPAYKKTEDSPPSPAEAAVHPTGSRPLEPEKKKSYFEQAKDIIPAYKKTEDSPPSPTEAAGHPTGSRPLEPEKKKSYFEQAKERTP GFKKSEEVSPRPAKAAAHHTETPLEPEEKKGFFEQAKERTPGFKKTEEVSPRPAKAAAHHTETPLEPEEKKGFFEQAKERTPGFKKTEEVSPRPAKAAAH LTETPLEPEEKKGFFDQAKERIPSHKKTEEVPPHPAKSASNEGAFSQTETPFEPEEKKGFLDKVKEKVPAHKTEEVPPPAESAFSHTETPFEPEEKKGFL DKVKEKELSRKKTEEVPHPPAAAFSHTNTPSEPEEKRGFLKEKVPTHKKTEEFPFPAKPAYTEAAVSNTNTPLEPEEKRGLLDKIKEKMPGHKKTEEVPP SEFDSTENVVSHKGEPMVKKGMMEKIKEKLPGHRPQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20440		AtCOR47, RD17, ...	cold-regulated 47 (.1)		Potri.002G013200 [exp]	0	1
					Potri.018G001950 [exp]	1.41	0.9687
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.002G152200 [exp]	3.16	0.9486
AT3G44610			Protein kinase superfamily pro...		Potri.009G146500 [exp]	4.89	0.9680
AT3G22120		CWLP	cell wall-plasma membrane link...		Potri.006G008500 [exp]	5.09	0.9185
					Potri.016G068650 [exp]	5.29	0.9580
AT2G26110			Protein of unknown function (D...		Potri.006G228800 [exp]	5.38	0.9138
					Potri.016G041301 [exp]	5.83	0.9321
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.015G085300 [exp]	7.14	0.9610
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.013G005900 [exp]	7.41	0.9571
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174202 [exp]	10.67	0.9562

Compare expression of checked genes

Potri.002G013200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.