Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42250 522 / 0 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 431 / 2e-150 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22430 431 / 3e-150 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 422 / 8e-147 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G24760 347 / 9e-118 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G77120 334 / 2e-112 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 333 / 2e-112 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 315 / 6e-105 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G64710 311 / 3e-103 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 117 / 7e-29 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G060000 [exp] 343 / 5e-116 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.014G193800 [exp] 333 / 2e-112 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.007G108401 [exp] 333 / 2e-112 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.004G067000 [exp] 333 / 3e-112 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Potri.007G108601 [exp] 333 / 3e-112 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 333 / 5e-112 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 332 / 6e-112 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 331 / 2e-111 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.011G152900 [exp] 332 / 5e-111 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040457 [exp] 475 / 1e-167 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10005651 [exp] 426 / 4e-149 AT5G42250 430 / 7e-151 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10023572 [exp] 421 / 2e-145 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004786 [exp] 411 / 9e-143 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004785 [exp] 404 / 2e-139 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000624 [exp] 395 / 3e-136 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10029759 [exp] 320 / 9e-107 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 318 / 2e-106 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 318 / 2e-106 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 317 / 1e-105 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G013400.3 pacid=42779240 polypeptide=Potri.002G013400.3.p locus=Potri.002G013400 ID=Potri.002G013400.3.v4.1 annot-version=v4.1 ATGGATGGAGAGAAATTCTCAGTCGAAGCAGGGAAACCAATTCTATGCAAAGCTGCGGTGGCTCGCAAACCAGGAGAGCCTCTCGTAATAGAGGAGATAA TCGTGGCTCCTCCGAGTCATCATGAAGTTCGTGTTCGAATTATCTGCACCTCTCTCTGTCAAAGTGATGTCACTTTTTGGAAATTGAAGGATCTTCCTGC TGTTTTTCCAAGAATACTTGGCCATGAGGCTATCGGAGTTGTGGAGAGTGTAGGGGAGGATGTAGATGAGGTCGTCGAAGGAGATGTTGTGATTCCTGTA TTCTTGCCAGATTGTGGAGATTGTGCAGACTGCAAATCAAAAAAGAGTAACCTTTGTTCGAAACTTCCCTTCCAGGTCTCTCCTTGGATGCCTAGAGATA AGACCAGTAGATTCACCAACCTAAAAGGAGAGGTTCTATACCATTTCCTAAATGTATCGAGTTTTAGTGAGTATACTGTGGTGGACACTGCCCATATTGT AAAGATTGATCCTTCAATCCCACCAAGTAAAGCATGCCTACTCAGTTGTGGAGTATCAACAGGGGTTGGAGCTGCATGGAGAACTGCAAATGTTGAGGCA GGGTCAACTGTTGTCATATTTGGGCTTGGGTCAATCGGCTTAGCAGTTGCAGAGGGTGCCAGAATAAGCGGCGCTACTAAGATTATAGGGGTGGATGTGA ATCAAGAAAAGTTCGAAATTGCAAAAAAATTTGGAGTCACAGACTTTGTCAATGTTGGAGAATGCGGGGATAAACCTGTGAGCCAGGTGATCAATGAAAT GACTGGTGGGGGAGCAGACTATTGCTTTGAATGTGTTGGTTTGGTGTCCTTGATGGAGCAAGCATATGCTTGCTGTCGAAAGGGATGGGGAAAGACAATC ATCTTAGGAGTGGAAAAACCAGAGTCACGGGTCTCCCTTCCGTGTGCGGATGTCCTTCAGAGTGGGAAAACCCTCACTGGAGCCTTGTTCGGTGGTCTCA AAGCTAAATCTGATATTCCAATTCTCCTAAAGCGTTACATGGACAAGGAACTGGAGTTGGATAAGTTTGTGACCCATGAGATCAATTTTGAAGACATTAA CAAAGCCTTCGATTTATTACTTGAAGGAAAGAGTCTCCGATGTGTAATTTGGATGGACAAACAAGCAAGCTACTCCAAAGGTGTTTGTATATCATGA
AA sequence Show only first row Show all	>Potri.002G013400.3 pacid=42779240 polypeptide=Potri.002G013400.3.p locus=Potri.002G013400 ID=Potri.002G013400.3.v4.1 annot-version=v4.1 MDGEKFSVEAGKPILCKAAVARKPGEPLVIEEIIVAPPSHHEVRVRIICTSLCQSDVTFWKLKDLPAVFPRILGHEAIGVVESVGEDVDEVVEGDVVIPV FLPDCGDCADCKSKKSNLCSKLPFQVSPWMPRDKTSRFTNLKGEVLYHFLNVSSFSEYTVVDTAHIVKIDPSIPPSKACLLSCGVSTGVGAAWRTANVEA GSTVVIFGLGSIGLAVAEGARISGATKIIGVDVNQEKFEIAKKFGVTDFVNVGECGDKPVSQVINEMTGGGADYCFECVGLVSLMEQAYACCRKGWGKTI ILGVEKPESRVSLPCADVLQSGKTLTGALFGGLKAKSDIPILLKRYMDKELELDKFVTHEINFEDINKAFDLLLEGKSLRCVIWMDKQASYSKGVCIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42250			Zinc-binding alcohol dehydroge...		Potri.002G013400 [exp]	0	1
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.010G220500 [exp]	5.19	0.8914
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.010G231500 [exp]	6.48	0.8761
AT1G09560		GLP5	germin-like protein 5 (.1)		Potri.013G000500 [exp]	13.78	0.8223	GER1.2
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.005G143900 [exp]	18.46	0.8637	IFS1.45,CYP81S8
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176500 [exp]	18.65	0.8877
AT3G02645			Plant protein of unknown funct...		Potri.003G024100 [exp]	26.40	0.8578
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176100 [exp]	33.46	0.8719	2OGox3
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176200 [exp]	38.07	0.8691	AOP1.1
AT2G38790			unknown protein		Potri.008G025100 [exp]	42.42	0.8421
AT1G80120			Protein of unknown function (D...		Potri.016G143500 [exp]	47.14	0.8607

Compare expression of checked genes

Potri.002G013400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.