Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76140 1165 / 0 Prolyl oligopeptidase family protein (.1.2) AT1G20380 1134 / 0 Prolyl oligopeptidase family protein (.1) AT1G50380 181 / 7e-48 Prolyl oligopeptidase family protein (.1) AT1G69020 112 / 2e-25 Prolyl oligopeptidase family protein (.1) AT5G66960 84 / 2e-16 Prolyl oligopeptidase family protein (.1) AT5G36210 49 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G14570 48 / 2e-05 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247400 [exp] 1354 / 0 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 1328 / 0 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247300 [exp] 1314 / 0 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.007G001300 [exp] 195 / 8e-53 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.010G137801 [exp] 114 / 4e-26 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 102 / 3e-22 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.008G160400 [exp] 56 / 9e-08 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Potri.002G128700 [exp] 45 / 0.0002 AT5G36210 1049 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021235 [exp] 1195 / 0 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034556 [exp] 1052 / 0 AT1G76140 1056 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10019994 [exp] 1019 / 0 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034558 [exp] 570 / 0 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10015387 [exp] 187 / 7e-50 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 167 / 3e-43 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 125 / 2e-29 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 119 / 1e-27 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 101 / 6e-22 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 101 / 9e-22 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00326 [poplar] [flax] Peptidase_S9 Prolyl oligopeptidase family CL0186 [poplar] [flax] Beta_propeller PF02897 [poplar] [flax] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain
Representative CDS sequence Show only first row Show all	>Potri.002G013900.1 pacid=42778240 polypeptide=Potri.002G013900.1.p locus=Potri.002G013900 ID=Potri.002G013900.1.v4.1 annot-version=v4.1 ATGGCTACGATCTCAGCACTCGACAAGCCTTTACAGTATCCAATCGTTCGCCGAGACGACACTGTAATTGACGATTACCATGGTGTAAAAATCGCAGATC CTTATCGATGGCTTGAAGATCCTGATGCAGAGGAGGTAAAAGAGTTTGTTCAGGAGCAAGTAAAATTGACAGAATCAGTGTTAAAGGCATGCGATACGAG AGAAAAACTTCGTGAAACAATCACCAAGTTATTCGATCACCCGCGATATGATGCGCCGTCTAAGCGAGGGAACAAGTATTTTTACTTTCATAATACTGGG CTTCAGGCTCAAGACGTCCTCTATGTGCAGGATAGTTTAGAGGGAGAGGCAGAGGTTTTGCTGGATCCAAATGAGCTAAGTGAGGATGGGACGGTGTCAT TGAATAGCTATACGATTTCGGCTAGCGAGGATGCTAAGTACTTGGCTTATGGGATTAGTAAGAGCGGGAGTGATTGGGTTACGATTAAAGTTATGCGCAT CGAGGATAAGATAGTTGAGGCTGATACTTTAAATTGGGTTAAGTTTACCAGTATTAAGTGGACTCATGATAGCAAAGGGTTCTTCTATGGCCGTTATCCG ACTCCCAAAGAGGGAGAAAACTTAGATGCTGGGACAGAGACTAATTCTAATCTTTATAATGAGCTATACTATCATTTCATGGGAAAGAATCAATCCGAAG ATATACTATGCTGGAGAGATCCTGAAAACCCCAAATATGCGTTTGGAGCTGATGTGACAGATGATGGAAAATATCTTCTCTTATATATTGGTGAGGGCTG CGATCCTGTCAACAAAGTATACCACTGTGATATGTCTGCATTTTCTGATGGCCTTGAAGGTTTCAAGGGAGGAAAAAGCCTGCTCCCATTTACTAAGCTT ATTGATAACTTTGATGCACGGTATCATGAGATTGCAAATGATGGCACATCGTTTACTTTTTTGACTAATAAAGATGCCCCTAAATATAAAATAGTCCGGG TAGATTTGAAGGAGCCTAGTAGCTGGATAGATGTTATCCCAGAATCTGAAAAGGATGTCCTGGAATCAGCATATGCTGTTGATGGTGATAAAATGATTGT CAGTTACTTGAGTGATGTGAAGCATGTTCTACAAATAAGGGATTTGAAAACAGGATCTCTACTGCATCAATTACCGATTGACATTGGTTCAGTTACTGGG ATATCTGCACAGCGAAAGGATAGTACAGTATTTATTGAGTTTACCAGTTTTCTCACCCCCCGTATAATATATCAATGCAATTTAGACACTGGTGTTCCAG ATTTGAAGATATTTCGTGAAATTAGTGTGCCAGGATTTGATCGTACAGAGTTCCATGTGGATCAGCTTTTTGTGACTAGCAAGGATGATACCAAGATACC AACGTTTATTGTTGCCAAGAAGAATATAAAGTTGGATGGGTCACACCCATGTTTGTTATATGGGTATGGGGGATTTAACATTAGTCTTACACCATCGTTT AGTGTCAGTCGTACTGTACTGACTAGGCATTTAGGTGCTGTCTTCTGCATTGCAAACATTCGTGGCGGCGGAGAATATGGTGAGGAATGGCATAAAGCAG GCTCACTTGCCAGAAAGCAGAATTGCTTTGATGACTTCATTTCTGTTTCTGAATATCTTGTATCTGCTGGCTATACCCAACCAAAGAAGTTGTGCATCGA AGGAGGCAGCAATGGTGGGCTTCTTGTTGGGGCTTGCATAAATCAGCGACCTGATCTGTTTGGTTGTGCTCTGGCTCGTGTTGGTGTTATGGACATGCTG CGATTTCACAAGTTCACTATAGGTCATGCATGGACTTCTGACTATGGCTGTTCAGACAAGAAGGAAGAGTTTGGTTGGCTAATCAAGTACTCGCCGCTGC ATAATGTTCGCAGACCATGGGAACAACATCCTGAACAACCTTCACAGTACCCACCTACCATGATATTGACTGCTGATCATGATGATCGAGTTGTGCCATT ACACTCTCTGAAGCTGTTGGCTACCATGCAATATATTTTGTGCACGAGCTTGGAGAAGAGTCCTCAGACAAATCCGATAATTGGTCGCATTGAGTGTAAG GCTGGACATGGAGCTGGACGCCCAACTCAAAAACTGATTGATGAAGCTGCTGATAGGTATAGCTTCATGGCAAGGATGCTTGGCGCTTCTTGGAATGAGT AA
AA sequence Show only first row Show all	>Potri.002G013900.1 pacid=42778240 polypeptide=Potri.002G013900.1.p locus=Potri.002G013900 ID=Potri.002G013900.1.v4.1 annot-version=v4.1 MATISALDKPLQYPIVRRDDTVIDDYHGVKIADPYRWLEDPDAEEVKEFVQEQVKLTESVLKACDTREKLRETITKLFDHPRYDAPSKRGNKYFYFHNTG LQAQDVLYVQDSLEGEAEVLLDPNELSEDGTVSLNSYTISASEDAKYLAYGISKSGSDWVTIKVMRIEDKIVEADTLNWVKFTSIKWTHDSKGFFYGRYP TPKEGENLDAGTETNSNLYNELYYHFMGKNQSEDILCWRDPENPKYAFGADVTDDGKYLLLYIGEGCDPVNKVYHCDMSAFSDGLEGFKGGKSLLPFTKL IDNFDARYHEIANDGTSFTFLTNKDAPKYKIVRVDLKEPSSWIDVIPESEKDVLESAYAVDGDKMIVSYLSDVKHVLQIRDLKTGSLLHQLPIDIGSVTG ISAQRKDSTVFIEFTSFLTPRIIYQCNLDTGVPDLKIFREISVPGFDRTEFHVDQLFVTSKDDTKIPTFIVAKKNIKLDGSHPCLLYGYGGFNISLTPSF SVSRTVLTRHLGAVFCIANIRGGGEYGEEWHKAGSLARKQNCFDDFISVSEYLVSAGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALARVGVMDML RFHKFTIGHAWTSDYGCSDKKEEFGWLIKYSPLHNVRRPWEQHPEQPSQYPPTMILTADHDDRVVPLHSLKLLATMQYILCTSLEKSPQTNPIIGRIECK AGHGAGRPTQKLIDEAADRYSFMARMLGASWNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76140			Prolyl oligopeptidase family p...		Potri.002G013900 [exp]	0	1
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.004G160400 [exp]	1.41	0.8289
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Potri.018G082900 [exp]	2.82	0.7884
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029800 [exp]	4.89	0.8076	DHQD2
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.006G108800 [exp]	6.70	0.7789	Pt-VMVSR.1
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G030000 [exp]	8.48	0.7752
AT3G19553			Amino acid permease family pro...		Potri.009G090300 [exp]	10.39	0.6954	PtrLAT7
AT5G12470			Protein of unknown function (D...		Potri.001G256300 [exp]	14.07	0.7678
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.014G193300 [exp]	15.49	0.7668
AT3G03210			unknown protein		Potri.004G080600 [exp]	18.13	0.7721
AT1G16270			Protein kinase superfamily pro...		Potri.007G069500 [exp]	20.97	0.7641

Compare expression of checked genes

Potri.002G013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.