Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76140 1217 / 0 Prolyl oligopeptidase family protein (.1.2) AT1G20380 1182 / 0 Prolyl oligopeptidase family protein (.1) AT1G50380 177 / 6e-47 Prolyl oligopeptidase family protein (.1) AT1G69020 116 / 9e-27 Prolyl oligopeptidase family protein (.1) AT5G66960 83 / 4e-16 Prolyl oligopeptidase family protein (.1) AT4G14570 49 / 2e-05 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) AT5G36210 49 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247300 [exp] 1400 / 0 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 1357 / 0 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 1352 / 0 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.007G001300 [exp] 187 / 5e-50 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.010G137801 [exp] 115 / 3e-26 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 102 / 4e-22 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.008G160400 [exp] 56 / 1e-07 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Potri.015G013400 [exp] 46 / 0.0001 AT5G24260 968 / 0.0 prolyl oligopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021235 [exp] 1216 / 0 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034556 [exp] 1078 / 0 AT1G76140 1056 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10019994 [exp] 1035 / 0 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034558 [exp] 578 / 0 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10015387 [exp] 178 / 1e-46 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 174 / 1e-45 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 145 / 1e-35 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 132 / 1e-31 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 98 / 7e-21 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 98 / 1e-20 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00326 [poplar] [flax] Peptidase_S9 Prolyl oligopeptidase family CL0186 [poplar] [flax] Beta_propeller PF02897 [poplar] [flax] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain
Representative CDS sequence Show only first row Show all	>Potri.002G014000.1 pacid=42777525 polypeptide=Potri.002G014000.1.p locus=Potri.002G014000 ID=Potri.002G014000.1.v4.1 annot-version=v4.1 ATGGGTTCCCTCTCAGCTCTTAGCCTACCATTACAGTATCCAACCGCTCGCCGAGACGACTCTGTAATTGATGATTACCATGGTGTAAAAATCGCTGATC CTTATAGATGGCTTGAAGATCCTGATGCAGAGGAGGTAAAAGAGTTTGTTCAGGAGCAAGTTACATTGACTGAATCAGTATTAAAGACATGCGATACAAG AGAAAGACTTCGTGAAAAAATCACTAAGTTATTTGATCACCCACGATATTATGTGCCGTTTAAGCGAGGGAACAAGTTTTTTTACTTTCATAATACCGGG CTTCAGGCTCAAGACGTCCTCTATGTGCAGGATTGTTTAGAGGGAGAGCCAGAGGTTTTACTTGATCCTAATGGATTTAGTGAGGATGGGACAGTGTCGT TGAATACCCTTTCGATCAGTGAGGATGCTAAGTACTTGGCATATGGACTTAGTACAAGTGGGAGTGATTGGATTACAATTAAAGTTATGCATGTTGAGGA AAAGATAGTTGAGGCTGATACTGTAAATTGGGTTAAGTTTACCAGTATTGGTTGGACACATGACAGCAAGGGGTTTTTCTATAGCCGATACCCGGCTCCC AAAGAGGGAGAAAACTTGGACGCCGGGACAGAGACTCATGCGAATCTTTATCATGAGCTATACCATCACTTTGTGGGTACGGATCAATCTGAAGATATAC TATGCTGGAGAGATTCTGAAAACCCTAAATACATGTTTGGAGCTGGTGTGACAGATGATGGAAAGTATCTTCTCCTATATATTACGGAGAATTGTGATCC AGTCAACAAAGTATACTACTGTGACATGTCTGCATTTTCTGATGGCCTTGAAGGTTTCAAGGGAGGAAAAAGCCTGCTCCCATTTATTAAACTTATTGAT AACTTTGATGCCCAGTACCAACACATAGCAAATGATGACACTGTATTTACTTTCTTGACTAATAAAGATGCCCCCAAATATAAAGTAGTCCGGGTTGATT TGAAGGAGCCAGGTAGTTGGATTGATGTTGTTCCAGAATATGGAAAAGATGTCCTCGAATCAGCATGTGCTGTTAATGGTGATAAAATGATTGTCAGTTA CTTGAGAGATGTGAAGTATGTCTTACAGATAAGGGATTTGAATACAGGATCTCTGCTGCATCAACTACCGATTGACATTGGTTCGGTTACAGGGATTTCT GCACGGCGCAAGGATAGTACAGTGTTTATAGGGTTCACTAGCTTTCTCACCCCTGGTATAATATATCAATGCAATTTAGACACTGGGGTTCCTGATATGA AGATATTTCGTGAAATTACTGTGCCTGGATTCGATCGCACAGAGTTCCAAGTGAATCAGGTTTTTGTGCCTAGCAAGGATGGTACCAAGATACCAATGTT TATTGTGGCCAAGAAGAATATAAAGTTGGATGGATCGCACCCATGTTTGTTATACGCCTATGGTGGATTTAACATTAGTCTTACACCATCGTTTAGTATC AGTCGTACTGTACTGACTAGGCATTTAGGTGCTGTCTTCTGCATTGCAAACATTCGTGGCGGCGGAGAATATGGTGAGGAATGGCATAAAGCAGGCTCAC TTGCCAGAAAGCAGAATTGCTTTGATGACTTCATTTCTGCTTCTGAGTATCTTGTAACTGCTGGTTACACCCAACCAAAGAAGTTGTGTATTGAAGGTGG AAGCAACGGTGGGCTTCTTATCGGTGCTTGCATAAATCAGCGACCTGATCTTTTTGGTTGTGCTCTGGCTCATGTTGGTGTTATGGACATGCTGCGATTC CACAAGTTTACCATAGGTCATGCTTGGACTTCTGACTTCGGCTGCTCAGACAAGAAGGAAGAGTTCGGTTGGCTAATCAAGTACTCGCCATTGCATAATG TCCGCAGACCATGGGAGCAACATCCTGAACAACCCTCTCAGTACCCATCGACGATGCTACTGACTGCTGATCATGACGACCGAGTTGTGCCGTTACACTC ACTGAAGTTATTGGCTACCATGCAACATATTTTGTGCACGAGCTTGAAGAAAAGCCCCCAGACCAATCCAATAATCGGCCGCATTGATTGTAAAGCTGGA CATGGAGCTGGACGGCCAACTCAAAAATTGATTGATCAAGCAGCTGATAGGTATAGCTTCATGGCAAAGATGGTGGGCGCTTCTTGGAATCAGTAG
AA sequence Show only first row Show all	>Potri.002G014000.1 pacid=42777525 polypeptide=Potri.002G014000.1.p locus=Potri.002G014000 ID=Potri.002G014000.1.v4.1 annot-version=v4.1 MGSLSALSLPLQYPTARRDDSVIDDYHGVKIADPYRWLEDPDAEEVKEFVQEQVTLTESVLKTCDTRERLREKITKLFDHPRYYVPFKRGNKFFYFHNTG LQAQDVLYVQDCLEGEPEVLLDPNGFSEDGTVSLNTLSISEDAKYLAYGLSTSGSDWITIKVMHVEEKIVEADTVNWVKFTSIGWTHDSKGFFYSRYPAP KEGENLDAGTETHANLYHELYHHFVGTDQSEDILCWRDSENPKYMFGAGVTDDGKYLLLYITENCDPVNKVYYCDMSAFSDGLEGFKGGKSLLPFIKLID NFDAQYQHIANDDTVFTFLTNKDAPKYKVVRVDLKEPGSWIDVVPEYGKDVLESACAVNGDKMIVSYLRDVKYVLQIRDLNTGSLLHQLPIDIGSVTGIS ARRKDSTVFIGFTSFLTPGIIYQCNLDTGVPDMKIFREITVPGFDRTEFQVNQVFVPSKDGTKIPMFIVAKKNIKLDGSHPCLLYAYGGFNISLTPSFSI SRTVLTRHLGAVFCIANIRGGGEYGEEWHKAGSLARKQNCFDDFISASEYLVTAGYTQPKKLCIEGGSNGGLLIGACINQRPDLFGCALAHVGVMDMLRF HKFTIGHAWTSDFGCSDKKEEFGWLIKYSPLHNVRRPWEQHPEQPSQYPSTMLLTADHDDRVVPLHSLKLLATMQHILCTSLKKSPQTNPIIGRIDCKAG HGAGRPTQKLIDQAADRYSFMAKMVGASWNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76140			Prolyl oligopeptidase family p...		Potri.002G014000 [exp]	0	1
AT1G24030			Protein kinase superfamily pro...		Potri.008G145900 [exp]	1.00	0.8591
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Potri.008G128800 [exp]	3.87	0.8262
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159000 [exp]	4.24	0.8580
AT4G10550			Subtilase family protein (.1.2...		Potri.011G146300 [exp]	7.00	0.8150
AT5G46940			Plant invertase/pectin methyle...		Potri.014G044100 [exp]	7.41	0.8208
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.008G086400 [exp]	12.48	0.7210
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113132 [exp]	13.41	0.8207
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Potri.006G109900 [exp]	14.14	0.8142
AT1G23460			Pectin lyase-like superfamily ...		Potri.001G463000 [exp]	14.38	0.7986
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.012G126500 [exp]	15.49	0.7815	NAC037

Compare expression of checked genes

Potri.002G014000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.