Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38430 592 / 0 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G02010 464 / 6e-159 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 440 / 1e-148 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 406 / 7e-136 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G00460 372 / 7e-124 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT4G13240 372 / 2e-123 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT3G24620 365 / 3e-120 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G01700 363 / 3e-120 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT1G52240 356 / 5e-116 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) AT1G79860 346 / 3e-113 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247100 [exp] 880 / 0 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 637 / 0 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 621 / 0 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.006G092600 [exp] 457 / 2e-155 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.008G062000 [exp] 457 / 7e-155 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 456 / 2e-153 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.010G196000 [exp] 451 / 1e-152 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.014G084200 [exp] 392 / 9e-132 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 392 / 1e-131 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025101 [exp] 586 / 0 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10023983 [exp] 575 / 0 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 566 / 0 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 564 / 0 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10040248 [exp] 457 / 2e-155 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 447 / 2e-151 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10022601 [exp] 449 / 1e-150 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10021500 [exp] 448 / 2e-150 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10009874 [exp] 437 / 7e-148 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 431 / 2e-145 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.002G014100.2 pacid=42779083 polypeptide=Potri.002G014100.2.p locus=Potri.002G014100 ID=Potri.002G014100.2.v4.1 annot-version=v4.1 ATGGGGGATGTTTCATCGGAGGATTGGATAGATCAAGTTAGCGAGAGGTTCGAGCTCGACAGTTACTGTTCAAGTGCGGATGTCAGCGGATCGGAGAGTG ATACTTCTATTAGTAGCTTCTCATGCCGCCGTTACGATGTCCAAGGTGGCGCTTCCACTTCTTTCACTTCTTCGACTCCTGATTTCGCCGGCAATTCCGC GTATTCTGCGCCTCTTCCGGTGATGCTCCCGGTTTCTGGTGGAAGATACGATGCTATTCCGGAGGAGAAGGAAGAGAAACCGGAGAGTGACTTGTCCGAA ATCGAACTGATGAGGGAACGTTTTGCTAAGCTGCTGCTTGGAGAAGACATGTCAGGTGGAGGACAGGGAACTTGCACCGCTGCCGCCATCTCCAATGCCA TCACGAATCTTTCTGCGTCTGTGTTTGGGGAGCTATGGAAATTAGAGCCATTAGCGCCGCAGAAAAAGGCAATGTGGAAAAGAGAGATGGAATGGCTTTT ATGCGTAAGTGATTCCATAGTAGAGCTTGTTCCGTCAATGCAAGAATTTCCTGGTGGAGGGACTTATGAGGTTATGGTGGCTCAGCCACGTTCGGATTTA TACGTGAACCTTCCAGCACTAAAGAAGCTTGATGCTATGCTGATTAGCATTCTGGACTTGTTTTCTGAACCTGAATTTTACTATGTTGATCGTGGGATTG TAGTTGCTGGTGATGATGTTATTGAGGAGTTTCCCGTGCCATCCTCTTTGAGAAGACCACCAATCAGACAGGAAGGAAAATGGTGGCTTCCTTTTCCTAA AGTTCCACCGAATGGTTTGTCGGAAGAGTTGACAAAGAGGCTGCAGCAGTGTAGGGAATGCACAAGCCAGATCCTTAAGGCTGCCATGGCAATTAACAGT AGCGTGTTAGCTGAGATGGAAATTCCTGATACTTATTTTGAGAACTTGCCCAAGAGTGGAAAAGCTTGCTTGGGAAGAATCATGTATCGCTACATAACTG CCAAACACTTTTCCCCAGATTACCTTCTGGATTACTTGGATGTGTCATCAGAATACACCACTTTGGAAATAGCGAACCGGATAGAAGCTGCCTCACATTT CTGGAGTGAAAAATACCTGAATAGGTACTTGGGTCGTGCAAGGGATGGGAGGTCATCATGGGGCGGCAAGGTGAAAGGCTTTGTTGGTGAAACACAAAAA AGGAAACTTCTAGCAAAACGAGCTGAAATTCTCATACATAACTTAAGGCTACGTTTTCCTGGCCTCCCACAGACTGCTTTGGACGCAAACAAGATCCAGT ATAACAAGGATGTAGGGTATGCTATTATTGAGAGCTATTCTAGGGTGATGGAAAGCTTGGCCTTCAACATAATGGCAAGAATTGATGATCTTCTATATGT GGATGATGCTACCAAGCAACGTGCAACCGCAGAGTCAGTATCCCCTTGTGTTCAGGGAAAGTTTAGTAGTAGACCATCTAAACAAAAGTCGATATCATCC AGCCATGTTTCATTTCAACACAGTTCCTCGTCTTCAATGCCAACTGCTGGCTCCTCCGGTGAAGTAATTAGGATTCCTAATGGAAGGAAACACCATTCCT TGAAGAAGAGCAATTTAAGGGACTCGCTAGATCAGACGCTAGAAAAACTAACATTTTGA
AA sequence Show only first row Show all	>Potri.002G014100.2 pacid=42779083 polypeptide=Potri.002G014100.2.p locus=Potri.002G014100 ID=Potri.002G014100.2.v4.1 annot-version=v4.1 MGDVSSEDWIDQVSERFELDSYCSSADVSGSESDTSISSFSCRRYDVQGGASTSFTSSTPDFAGNSAYSAPLPVMLPVSGGRYDAIPEEKEEKPESDLSE IELMRERFAKLLLGEDMSGGGQGTCTAAAISNAITNLSASVFGELWKLEPLAPQKKAMWKREMEWLLCVSDSIVELVPSMQEFPGGGTYEVMVAQPRSDL YVNLPALKKLDAMLISILDLFSEPEFYYVDRGIVVAGDDVIEEFPVPSSLRRPPIRQEGKWWLPFPKVPPNGLSEELTKRLQQCRECTSQILKAAMAINS SVLAEMEIPDTYFENLPKSGKACLGRIMYRYITAKHFSPDYLLDYLDVSSEYTTLEIANRIEAASHFWSEKYLNRYLGRARDGRSSWGGKVKGFVGETQK RKLLAKRAEILIHNLRLRFPGLPQTALDANKIQYNKDVGYAIIESYSRVMESLAFNIMARIDDLLYVDDATKQRATAESVSPCVQGKFSSRPSKQKSISS SHVSFQHSSSSSMPTAGSSGEVIRIPNGRKHHSLKKSNLRDSLDQTLEKLTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.002G014100 [exp]	0	1
AT1G26100			Cytochrome b561/ferric reducta...		Potri.010G131100 [exp]	3.00	0.8488
AT4G34215			Domain of unknown function (DU...		Potri.009G096400 [exp]	4.89	0.8104
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	6.00	0.8066
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Potri.011G055500 [exp]	15.23	0.7929
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Potri.001G278300 [exp]	16.79	0.7934
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.006G098300 [exp]	16.97	0.7568	PtrAUX1,AUX1.2
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.004G104000 [exp]	17.57	0.7213
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G026600 [exp]	18.00	0.7702
					Potri.010G190900 [exp]	18.43	0.8057
AT2G44930			Plant protein of unknown funct...		Potri.017G019400 [exp]	21.49	0.7875

Compare expression of checked genes

Potri.002G014100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.