Plant FIBer expression Database

Potri.002G014300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76130 709 / 0 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
AT1G69830 421 / 2e-139 ATAMY3, AMY3 alpha-amylase-like 3 (.1)
AT4G25000 350 / 2e-117 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G093200
[exp]
434 / 2e-143 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1)
Potri.010G092900
[exp]
415 / 6e-137 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1)
Potri.014G029400
[exp]
369 / 4e-125 AT4G25000 580 / 0.0 alpha-amylase-like (.1)
Potri.002G126300
[exp]
363 / 1e-122 AT4G25000 591 / 0.0 alpha-amylase-like (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021836
[exp]
736 / 0 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
Lus10013270
[exp]
416 / 5e-137 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1)
Lus10036717
[exp]
414 / 1e-136 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1)
Lus10037211
[exp]
411 / 3e-135 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1)
Lus10030793
[exp]
411 / 1e-132 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1)
Lus10042655
[exp]
337 / 3e-112 AT4G25000 567 / 0.0 alpha-amylase-like (.1)
Lus10021728
[exp]
333 / 1e-110 AT4G25000 563 / 0.0 alpha-amylase-like (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00128 Alpha-amylase Alpha amylase, catalytic domain
CL0369 GHD PF07821 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain
Representative CDS sequence
>Potri.002G014300.10 pacid=42779555 polypeptide=Potri.002G014300.10.p locus=Potri.002G014300 ID=Potri.002G014300.10.v4.1 annot-version=v4.1
ATGCAGGGAAACGACCAGCAGACTGATAATGGTATGCTGCTCTTATCATTCCTTTCAGTAACTGTCTCTCTAATTAGATGTTTTTGTTCATTAATTATGA
ACTGTGACGGGGTTAATTACTTTTGGTTAGGAGCTGTGCTGCGGAGCGGAAGAGAAATCCTTCTTCAGGCTTTTAACTGGGAGTCACATAAGCATGACTG
GTGGAGAAAATTGGAGAAGAAAGTTGCTGATATTGCGAAATCTGGGTTTACCACAGCATGGTTGCCGCCGCCTACTAACTCCTTCGCACCCGAAGGTTAT
CTTCCACAGAACCTTTATAACCTCAACTCTTCATATGGTTCCGAGCAACTCTTAAAGGCTTTACTTGAAAAGATGAAGCAGTACAATGTTAGAGCAATGG
CTGACATTGTTATCAATCACCGGGTTGGAACAACGCAAGGGCACGGTGGAATGTACAATCGTTATGATGGAGTTCCATTATCGTGGGATGAACGTGCTGT
TACATCTTGTACTGGTGGATTGGGTAATCGAAGCACTGGTGACAACTTCAATGGGGTTCCAAATATTGACCATACTCAACATTTTGTTCGAAAAGACATA
ACTGCATGGCTGCAGTGGTTACGTAAGAATGTTGGCTTTCAGGATTTCCGTTTTGATTTTGCAAGAGGTTATTCTCCAAAATATGTGAAAGAATACATTG
AAGGAGCGAAGCCCATATTTTCAGTTGGAGAGTACTGGGATTCTTGCAATTACAATGGCCATTTTTTGGAATACAACCAAGACAGCCATAGGCAGCGGAT
AGTCAATTGGATTGATTTAACAGGCCAGCTCTCAGCTGCATTTGACTTCACAACAAAGGGAATTCTTCAGGAAGCTGTAAAGGGGCAATTCTGGCGTCTG
CGTGACCCGCAAGGAAAGCCACCAGGTGTATTGGGATGGTGGCCCTCGAGGGCTGTCACATTCATTGATAACCATGACACAGGCTCAACACAGGCTCATT
GGCCTTTCCCTTCGGATCATATTATGGAGGGTTATGCTTACTTGCTTACACATCCAGGGATGCCGACAGTTTTCTACGATCACTTCTATGACTGGGGTAA
TTCTATTCATGAGCAGATTGTGAAATTGATTGACATTCGGAAGCATCAAGATATCCACAGCCGATCATCTATCAGGATTTTTGAGGCCCAGCCAAACCTT
TATTCTGCAATTATTGGTGAGAAGGTGTGCATGAAGATTGGGGATGGTTCCTGGTGCCCAGCGGGTAAGGAGTGGACGCTTGCAACCTCTGGCCACCGAT
ATGCCGTGTGGCAAAAATAA
AA sequence
>Potri.002G014300.10 pacid=42779555 polypeptide=Potri.002G014300.10.p locus=Potri.002G014300 ID=Potri.002G014300.10.v4.1 annot-version=v4.1
MQGNDQQTDNGMLLLSFLSVTVSLIRCFCSLIMNCDGVNYFWLGAVLRSGREILLQAFNWESHKHDWWRKLEKKVADIAKSGFTTAWLPPPTNSFAPEGY
LPQNLYNLNSSYGSEQLLKALLEKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGVPLSWDERAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDI
TAWLQWLRKNVGFQDFRFDFARGYSPKYVKEYIEGAKPIFSVGEYWDSCNYNGHFLEYNQDSHRQRIVNWIDLTGQLSAAFDFTTKGILQEAVKGQFWRL
RDPQGKPPGVLGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYLLTHPGMPTVFYDHFYDWGNSIHEQIVKLIDIRKHQDIHSRSSIRIFEAQPNL
YSAIIGEKVCMKIGDGSWCPAGKEWTLATSGHRYAVWQK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76130 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMY... Potri.002G014300
[exp]
0 1
AT4G13400 2-oxoglutarate (2OG) and Fe(II... Potri.018G076700
[exp]
2.64 0.8953
AT1G19715 Mannose-binding lectin superfa... Potri.002G030400
[exp]
6.00 0.8710
Potri.010G132000
[exp]
6.24 0.8925
AT5G54660 HSP20-like chaperones superfam... Potri.011G131800
[exp]
7.48 0.8676
AT1G69510 cAMP-regulated phosphoprotein ... Potri.010G167000
[exp]
7.48 0.8826
AT1G58340 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWAR... Potri.002G107200
[exp]
9.16 0.8314 Pt-ZF14.1
AT1G79430 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPM... Potri.008G081800
[exp]
10.39 0.8504 APL.2
AT1G28520 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger... Potri.004G050900
[exp]
13.71 0.7752
Potri.008G114101
[exp]
15.49 0.8752
AT5G38710 Methylenetetrahydrofolate redu... Potri.017G109300
[exp]
16.52 0.7829

Potri.002G014300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.