Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20370 561 / 0 Pseudouridine synthase family protein (.1) AT1G76120 557 / 0 Pseudouridine synthase family protein (.1.2) AT2G30320 79 / 3e-15 Pseudouridine synthase family protein (.1) AT1G20290 72 / 2e-13 SWI-SNF-related chromatin binding protein (.1) AT5G35400 60 / 2e-09 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247000 [exp] 873 / 0 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1) Potri.013G154200 [exp] 81 / 6e-16 AT2G30320 486 / 2e-168 Pseudouridine synthase family protein (.1) Potri.018G147400 [exp] 50 / 3e-06 AT5G35400 488 / 8e-172 Pseudouridine synthase family protein (.1.2) Potri.002G061650 [exp] 48 / 1e-05 AT1G34150 474 / 1e-165 Pseudouridine synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021231 [exp] 644 / 0 AT1G76120 584 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005641 [exp] 640 / 0 AT1G20370 588 / 0.0 Pseudouridine synthase family protein (.1) Lus10042233 [exp] 80 / 2e-15 AT2G30320 447 / 7e-153 Pseudouridine synthase family protein (.1) Lus10026423 [exp] 79 / 2e-15 AT2G30320 459 / 5e-158 Pseudouridine synthase family protein (.1) Lus10023799 [exp] 50 / 2e-06 AT1G34150 422 / 3e-147 Pseudouridine synthase family protein (.1) Lus10022949 [exp] 50 / 2e-06 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2) Lus10027594 [exp] 49 / 5e-06 AT5G35400 492 / 1e-173 Pseudouridine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [poplar] [flax] PseudoU_synth PF01416 [poplar] [flax] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Potri.002G014400.1 pacid=42777516 polypeptide=Potri.002G014401.1.p locus=Potri.002G014400 ID=Potri.002G014400.1.v4.1 annot-version=v4.1 ATGGAAACCCCAGCTTCAAAAACCAAAGTATCACCGCCACCACAGCAAGAACCAGACCTCAAAAAGCCCAAAATGTCCACTACGACCTCTGACGACGAAG ACGCCGCCACCATGACCCCTGGTGGCGACACAACCACCAAAAAGCAAAGATACAAGCGCCGCAAAATCGCAATATTCTTCGCGTACTGTGGCGTTGGCTA TCAAGGTATGCAGAAAAATCCAGGTGCCAAAACCATCGAAGGGGACCTTGAAGAAGCCCTCTTTCACGCCGGTGCTGTCCCTGAACAGGACCGCGGCATC CCCAAGCGTTATGATTGGGCCCGCTCAGCTCGCACTGACAAGGGCGTGAGCGCTGTGGGTCAGGTAGTCTCGGGCCGGTTCTACATCGACCCGCCTGGAC TTGTGGAACGCTTGCATTCGAATCTTTCTCCTCAGTTTAGGATTTTTGGCTACAAGAGAGTGACGGGATCGTTTAATGCTAAGAAGTTCTGTGATCGGAG GAGGTATGTGTATTTAATTCCTGTTTTTGCTCTTGATCCGTGTTCCCATCGTGACAGGGAGAGTGTTTTAGCTAGTTTACGGTCTGGTAGTGAGCTTATT AAGTGTTTGGAGTGTTCAGAGAGAGGGCGTAAGGTTGCTGGCGCTGTAGGCAAGCGCAGCTTTGAATTAGCAGACAATTCGTCGAACGATAAAGATGCTT CTGTTAAATCTGAAATTAAAGAGGAGGTTGGTGTGCTTTTGGATAATGGGCTTGAGGATATTAGGAATTCTGAAACTGTAAATGAAACTAAGATCTTTCA AAATGACGGTAGCGGATCAAAATCTGTAATGCCTGAATCAGTCATTTCATCAAACAGTGAAGATGCTAATGTCAATCCTGAAAGCAAAGACGAAATAATA GTTTCCGTGGAGAATGGTGATGATGAGAAGACAAAATCCAAAGAGGAAATGGTGAAGGGAAGTAGTTTTTGTTACGGAGAGAAGGAGAAGGAGAGGTTCA ATCGAATACTGGGTTATTACGTGGGGAGTCATAACTTTCATAATTTTACAACCAGAACTAAGGCTGAAGACCCCTCTGCTCGACGCTATATTGTTTCGTT TGAAGCTAAGACCACAGTTAATGTTGAAGGCATTGAGTTTGTGAAGTGTGAGGTTGTAGGTCAGAGTTTCATGCTTCATCAGATACGGAAGATGATAGGG GTTGCTGTGGCAATTATGAGGAACTGTGCACCTGAGTCGTTGATACAAACTGCTCTACAAAAGGATGTTAACATCAATGTGCCTACAGCTCCTGAAGTTG GGTTATACTTGGATGAGTGCTTTTTCACATCCTATAACCAGAAATGGAAAGACAGCCACGAAGAAATTTCTATGAAAGATTATGAAGAAGAGGCAGAGGA CTTCAAGATGAAGCACATATACTCACACATTGCAACGACAGAACACAAGGAAGGATCAGTGGCTCTGTGGTTACATTCTCTCAACCACCGAAACTATCCT GATCTTCGTGTTAGCAACACTGTAGATAACAACAACAGTGAAGATAATAACAATGGCAAGGAAAGCACTGGATTTGAAAACACGGCTCCATGTACATCTC TGTGA
AA sequence Show only first row Show all	>Potri.002G014400.1 pacid=42777516 polypeptide=Potri.002G014401.1.p locus=Potri.002G014400 ID=Potri.002G014400.1.v4.1 annot-version=v4.1 METPASKTKVSPPPQQEPDLKKPKMSTTTSDDEDAATMTPGGDTTTKKQRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGI PKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVERLHSNLSPQFRIFGYKRVTGSFNAKKFCDRRRYVYLIPVFALDPCSHRDRESVLASLRSGSELI KCLECSERGRKVAGAVGKRSFELADNSSNDKDASVKSEIKEEVGVLLDNGLEDIRNSETVNETKIFQNDGSGSKSVMPESVISSNSEDANVNPESKDEII VSVENGDDEKTKSKEEMVKGSSFCYGEKEKERFNRILGYYVGSHNFHNFTTRTKAEDPSARRYIVSFEAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIG VAVAIMRNCAPESLIQTALQKDVNINVPTAPEVGLYLDECFFTSYNQKWKDSHEEISMKDYEEEAEDFKMKHIYSHIATTEHKEGSVALWLHSLNHRNYP DLRVSNTVDNNNSEDNNNGKESTGFENTAPCTSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20370			Pseudouridine synthase family ...		Potri.002G014400 [exp]	0	1
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	3.74	0.9284
AT3G06920			Tetratricopeptide repeat (TPR)...		Potri.010G014100 [exp]	3.74	0.8743
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	3.87	0.9255
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	5.47	0.9102
AT2G40700			P-loop containing nucleoside t...		Potri.019G059100 [exp]	10.63	0.8103
AT5G07900			Mitochondrial transcription te...		Potri.003G189300 [exp]	14.69	0.8351
AT1G30290			Tetratricopeptide repeat (TPR)...		Potri.011G082300 [exp]	14.96	0.9148
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G030000 [exp]	14.96	0.8702
AT5G58210			hydroxyproline-rich glycoprote...		Potri.018G151900 [exp]	16.24	0.8250
					Potri.010G010851 [exp]	24.12	0.8922

Compare expression of checked genes

Potri.002G014400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.