Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17030 129 / 1e-33 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17036 96 / 2e-21 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G55150 89 / 2e-19 Protein of unknown function (DUF295) (.1) AT3G22345 66 / 7e-12 unknown protein AT4G22060 60 / 1e-09 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G03560 60 / 1e-09 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G60060 60 / 1e-09 Protein of unknown function (DUF295) (.1) AT1G65770 58 / 4e-09 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT3G25750 57 / 1e-08 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G44080 57 / 1e-08 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140000 [exp] 171 / 5e-49 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 171 / 8e-49 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G015700 [exp] 154 / 2e-43 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.004G134900 [exp] 117 / 3e-29 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105400 [exp] 90 / 2e-19 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.001G277400 [exp] 89 / 3e-19 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105100 [exp] 87 / 1e-18 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.003G127700 [exp] 83 / 3e-17 AT5G55150 56 / 2e-08 Protein of unknown function (DUF295) (.1) Potri.004G137700 [exp] 79 / 5e-16 AT4G22165 69 / 9e-13 F-box family protein with a domain of unknown function (DUF295) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025100 [exp] 152 / 9e-42 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 150 / 3e-41 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10028385 [exp] 91 / 1e-19 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1) Lus10041838 [exp] 90 / 1e-19 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10013995 [exp] 87 / 2e-18 AT2G17030 52 / 6e-07 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10008665 [exp] 81 / 1e-16 AT5G55150 63 / 9e-11 Protein of unknown function (DUF295) (.1) Lus10029350 [exp] 75 / 5e-15 AT4G22060 45 / 3e-05 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022650 [exp] 72 / 9e-14 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10021517 [exp] 61 / 4e-10 AT2G17030 166 / 2e-47 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10035492 [exp] 57 / 1e-08 AT4G17565 63 / 1e-10 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [poplar] [flax] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Potri.002G014500.1 pacid=42777852 polypeptide=Potri.002G014500.1.p locus=Potri.002G014500 ID=Potri.002G014500.1.v4.1 annot-version=v4.1 ATGGCCGTAGACTGGACTCAACTCCCACCTGAATTAATCGAAATAATCTCGAAAAAAATCACAATCTACTCCGATTATCTCCATTTCCAAGCAGTCTGCC ACGCATGGAAATCTTCGATCCCCAAGACACCCAACCACCTCCCTCCACAACTCCCATGGCTCCTGCTTCCTCAATCCCAATCAAACCAATCTTCCTACCG TGCTTTCTTCAATCTCTCCACCTACAAATTCCACTCCCTTAACCTCCCAGAAGCCTCTCATCGTAAAAAACACTGTGGTTCTTCTCATGGCTGGCTCATA ATCCTAGACGATTCTCCTTCAATTCTTGTCATAAATCCCTTAACACGAAGAAAAATTCATTTGCCTGCGATATCTAGTTTTCCTAATGTTGTTAGCTTCG ATTACGCCAATGTGGGGCGAGAGTATTTGCTTGTTAATCCGCAGGGAGAGCGTAATACAGCTAGCTTGAGGCAAATGAGAGATGGGTTTATAAAGAAAGT TGTTATGTCTTCAAGCCCTTTGGAAAAGAAGGGAGATTTCTTCGTGGCGATGGCAATTCTTTGTTCAACAGGTGATTTGGCTTACTGTAAAAATGGAGAT GAATGTTGGAATATAGTAGAGAATTCGCGTTCTTTTAGTGAAGATGTTATTTATTTTAATGGATTATTTTATGCTGTCAATAAGGCTGGCCAAATTGTTG TATGTGATGTTAATGGCAATTCACCTAAGGTTTCGTTTATCGAAACCCCACGGCAAATTGGTGGTGATATGCAGTATTTGGTTAGTTCGGGAGATGGGTT GTTATTAGTTACAAGGTATTTGGATCTTGATGTTGAGTTTGATATTTTTATCTATAAAACAGCGAGGTTTGAAGTTTTTAAGCTAGACTTGAATGGACCA AGGTGGGAGAGGGTGACAAGTTTGGGTGATATGATGTTGTTCATTGGAGAGAATTCTTCGCTGGCGTTATCTGCTTCGGGTTTGTCAGGATGTATGGGGG ACTGTATATATTACACTGATGATTACTCTGCAAATAATTATGATGGTCATATTGGAGAACATGATTTGGGCATTTTCAAATTATCGGATGGAAGCATTGA ACCATTGCCTTGTTATCCGCGGAATTCTTATTCGCGGTTGCAATGGCCTCCACCACTTTGGATTTCGCCCAATCCATACTAA
AA sequence Show only first row Show all	>Potri.002G014500.1 pacid=42777852 polypeptide=Potri.002G014500.1.p locus=Potri.002G014500 ID=Potri.002G014500.1.v4.1 annot-version=v4.1 MAVDWTQLPPELIEIISKKITIYSDYLHFQAVCHAWKSSIPKTPNHLPPQLPWLLLPQSQSNQSSYRAFFNLSTYKFHSLNLPEASHRKKHCGSSHGWLI ILDDSPSILVINPLTRRKIHLPAISSFPNVVSFDYANVGREYLLVNPQGERNTASLRQMRDGFIKKVVMSSSPLEKKGDFFVAMAILCSTGDLAYCKNGD ECWNIVENSRSFSEDVIYFNGLFYAVNKAGQIVVCDVNGNSPKVSFIETPRQIGGDMQYLVSSGDGLLLVTRYLDLDVEFDIFIYKTARFEVFKLDLNGP RWERVTSLGDMMLFIGENSSLALSASGLSGCMGDCIYYTDDYSANNYDGHIGEHDLGIFKLSDGSIEPLPCYPRNSYSRLQWPPPLWISPNPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17030			F-box family protein with a do...		Potri.002G014500 [exp]	0	1
AT5G46250			RNA-binding protein (.1.2.3)		Potri.011G080700 [exp]	1.41	0.8648
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.015G106200 [exp]	2.44	0.8243
AT3G04350			Plant protein of unknown funct...		Potri.013G048300 [exp]	3.74	0.8101
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.011G068600 [exp]	5.09	0.7789	GSK1.1
AT5G39785			Protein of unknown function (D...		Potri.017G082300 [exp]	6.32	0.8119
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	9.59	0.8238
AT3G25910			Protein of unknown function (D...		Potri.018G070500 [exp]	10.90	0.7885
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	11.48	0.8388
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.005G190700 [exp]	13.96	0.7662
AT1G21740			Protein of unknown function (D...		Potri.005G070200 [exp]	18.57	0.7933

Compare expression of checked genes

Potri.002G014500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.