Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G10210 169 / 1e-52 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G69340 59 / 4e-10 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246800 [exp] 359 / 3e-128 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G107300 [exp] 262 / 1e-89 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.006G043166 [exp] 187 / 1e-59 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.008G093100 [exp] 57 / 1e-09 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.010G161500 [exp] 55 / 7e-09 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028388 [exp] 292 / 1e-101 AT4G35750 313 / 5e-110 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10041841 [exp] 291 / 4e-101 AT4G35750 323 / 7e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10021230 [exp] 266 / 2e-91 AT4G35750 265 / 7e-91 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10005640 [exp] 263 / 3e-90 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10035431 [exp] 187 / 2e-59 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031044 [exp] 187 / 2e-59 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10030413 [exp] 66 / 2e-12 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 61 / 1e-10 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 58 / 1e-09 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF13716 [poplar] [flax] CRAL_TRIO_2 Divergent CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.002G014700.1 pacid=42777613 polypeptide=Potri.002G014700.1.p locus=Potri.002G014700 ID=Potri.002G014700.1.v4.1 annot-version=v4.1 ATGGCTTCGCCTTCAACTCTCACGCGTTCTGAGCAAGAAAATCTCCTAGAAAAACTTGGTGTTTTCAAGATTCAAGGCCGTGATAAACATGGCCGTAAGG TTCTTCTCATCATTGGCAAACTCTTCCCTGCTCGAGCGGTGAGCAGTGAGGTGTTGAAGAAATACCTGGAGGAGAAAATATATCCAAAATTAGAAGAGAA GGCATTTTCTGTGGTGTATGTACACACAGATGTTCAAAGGAGTGAGAATTTCCCTGGGATTTCAACCCTTCGATCTATTTATGATGATATTCCAATGAAC GTCAAGAGTCATCTTGAATCTGTTTACTTTTTGCATCCGGGACTCCAAGCCAGACTCTTCCTTGCCACCTTTGGTCGTTTTCTCTTCAGTGGAGGGTTAT ACTCGAAGCTGAAATACGTGACGAGGATGGAGTTTTTGTGGGACCATGTGAGGAGGAATGAGATTGGGATACCGGAATTCGCTTATGATCACGACGAAGA GCTGGAGTACCGTCCGATGATGGATTATGGATTAGAGAGTGATCATCCTAGAGTCTACGGTGGGCCATCAATGGATAATAATCCACTTTCATTGTATTCA ATGCGATGCATTGCGTAG
AA sequence Show only first row Show all	>Potri.002G014700.1 pacid=42777613 polypeptide=Potri.002G014700.1.p locus=Potri.002G014700 ID=Potri.002G014700.1.v4.1 annot-version=v4.1 MASPSTLTRSEQENLLEKLGVFKIQGRDKHGRKVLLIIGKLFPARAVSSEVLKKYLEEKIYPKLEEKAFSVVYVHTDVQRSENFPGISTLRSIYDDIPMN VKSHLESVYFLHPGLQARLFLATFGRFLFSGGLYSKLKYVTRMEFLWDHVRRNEIGIPEFAYDHDEELEYRPMMDYGLESDHPRVYGGPSMDNNPLSLYS MRCIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35750			SEC14 cytosolic factor family ...		Potri.002G014700 [exp]	0	1
AT2G42975			unknown protein		Potri.005G204200 [exp]	2.82	0.8782
AT4G10270			Wound-responsive family protei...		Potri.019G116700 [exp]	12.24	0.8743
AT1G77122			Uncharacterised protein family...		Potri.002G071700 [exp]	15.39	0.8477
AT2G15890		MEE14	maternal effect embryo arrest ...		Potri.009G108200 [exp]	19.89	0.8269
AT1G76050			Pseudouridine synthase family ...		Potri.002G016800 [exp]	25.92	0.8311
AT1G29120			Hydrolase-like protein family ...		Potri.011G065700 [exp]	25.98	0.8365
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Potri.002G032500 [exp]	28.56	0.8396
AT5G57060			unknown protein		Potri.003G044400 [exp]	32.12	0.7965
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Potri.003G222800 [exp]	35.07	0.8247
AT5G27280			Zim17-type zinc finger protein...		Potri.002G015900 [exp]	35.14	0.8127

Compare expression of checked genes

Potri.002G014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.