Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40410 749 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 457 / 7e-152 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 446 / 4e-148 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 439 / 4e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 439 / 5e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 439 / 1e-144 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 432 / 2e-143 MEF22 mitochondrial editing factor 22 (.1) AT3G46790 431 / 2e-143 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 432 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04780 429 / 4e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105700 [exp] 469 / 6e-158 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 464 / 2e-156 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 465 / 3e-156 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 462 / 4e-156 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 457 / 2e-152 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 452 / 4e-151 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 455 / 7e-151 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 451 / 1e-149 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 449 / 1e-149 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021229 [exp] 793 / 0 AT5G40410 662 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 461 / 1e-154 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 461 / 1e-152 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10035788 [exp] 459 / 2e-152 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 451 / 5e-149 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000706 [exp] 449 / 2e-148 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10039117 [exp] 442 / 1e-147 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 447 / 2e-146 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034715 [exp] 437 / 5e-146 AT5G04780 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 438 / 6e-146 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.002G014800.4 pacid=42778361 polypeptide=Potri.002G014800.4.p locus=Potri.002G014800 ID=Potri.002G014800.4.v4.1 annot-version=v4.1 ATGATAATGCTAATTCCTTACATGCAAAGAGCTTCAAAACTCTTGATTCTACACAAATTTATAAGCTCAATAAGGCTTTACAATTCTTTTGCTTCACAAT TGTCTCCCACGTTTCACGCCTTTTCAAATGTAGACTCCCTTGTTTCAGCTCTAATCACTGCTATAAGCACTTGCAGTTCCATCTCTTATTGCAGGGCACT TCACTGTCGAGTAATCAAGTCTGTGAATTATAATCATGGGTTCATTGGCGATCAACTGGTGTCTAGTTATGTTGAATTGGGATGTACAAAAGATGCACTT GAGTTGTTCGATGAATTGCCTGACAAGGACTTGGTCTCCTGGAATTCTTTGATTTCTGGGTTTTCTCGACGGGCGGATTTGGGAATTTGCTTGGGTTTGC TTTTCAGGATGAGATTTGAAATGGGTTTGAAACCTAATGAAGTTACGGTTATACCTGTAGTTTCAGCTTGTGCTGGTGTTGGAGAACTTGATGTGGGCAA GTGCATTCACGGGATTGCAGTGAAATCGGGCATGCTTTTGGAGGTTAAAGTTGTTAATTCTCTTATTAACTTGTATGGAAAGTGTGGATGTTTGGAGGCG GCTTGTTGCTTGTTCGAAGGAATGTCAGTGCAAAGTTTAGTGTCATGGAATTCAATGGTTGCAGTTCATGTTCACATGGGATTGGCTGAGAAAGGGATTG GTTATTTTATTATGATGAGGAGAGCTGGAATTAACTCTGATCAAGCCACTGTAGTGAGCTTGCTTCTAGCGTGTGAAAATTTAGGTGTGAGGAAACTGGC AGAGGCTGTTCATGGTTATATCTTGAACGGTGGTCTTGATGGGAATTTAGCAATTGCAACTGCATTGTTGGATTTGTATGCTAAATTAGGTACTTTGAGT GATTCATGCAAGGTCTTCGGAGGGATGATTAATCCGGATGCAGTGGCTTGGACTGCCATGCTATCGAGTTATGCTATGCATGGGCGTGGGCGAGAAGCCA TAGAACATTTTGAGCTAATGGTTAGAGAAGGTGTGGTGCCTGATCATGTTACGTTCACTCACTTGCTGAGTGCTTGTAGCCATTCAGGACTAGTGGAGGA GGGTAAAAATTACTTTAAGATTATGTATGAAGTTTATGGAGTTGAGCTAAGAGTGGAACATTATTCATGCATGGTTGATCTTTTAGGTCGCTCTGGACAT CTGAATGATGCTTATAAGCTAATCAAAAGCATGCCAATGGAGCCAAATTCTGGTGTGTGGGGAGCTCTTATTGGTGCATGCAGGGTTCGTGGTAATATTG AACTTGGGAAGGAAGTTGCCGAGCGATTGTTTTCTTTAGACCCATCAGACTCTAGAAATTATATCACGTTGTCAAATATGTATTCTGCAGCTGGTCAATG GAGGGATGCTTCAAAGGTGAGGGCTTTGATGAAGGAAAGGGTCCTGATCAGGAATCCTGGATGCAGTTATATTGAGCACGGGAACAAAATACACTGCTTT GTAATGGGTGATCAATCTCACCCTGACACAGAACAAATATATAACAAGTTGGAAGAACTCGTTAGAAAGAATCGGGAAGTTGGATTTGCGTCAAAAACAG AATATGTTCTACATGATGTGGATGAGGAAGTGAAAGAAGATTTGATCAATAAGCACAGTGAGAAGTTAGCCATTGCCTTTGGACTTTTGGTGACTAATGC TGGTATGCCATTAATTATTACAAAGAACATTAGGATATGTGGTGATTGCCATGGCTTTGCAAAGCTCATATCATTGATTGAGAAGCGTACAATCATTATT AGAGATACAAAGCGATTTCACCATTTCACAAATGGATTATGCTCTTGTGGAGATTACTGGTAA
AA sequence Show only first row Show all	>Potri.002G014800.4 pacid=42778361 polypeptide=Potri.002G014800.4.p locus=Potri.002G014800 ID=Potri.002G014800.4.v4.1 annot-version=v4.1 MIMLIPYMQRASKLLILHKFISSIRLYNSFASQLSPTFHAFSNVDSLVSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDAL ELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEA ACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLS DSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEVYGVELRVEHYSCMVDLLGRSGH LNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCF VMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIII RDTKRFHHFTNGLCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	0	1
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	1.41	0.9398
AT5G52850			Pentatricopeptide repeat (PPR)...		Potri.004G071800 [exp]	2.44	0.9330
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	4.47	0.9374
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	6.70	0.9289
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	7.00	0.9328
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.016G019900 [exp]	7.74	0.9261
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	8.24	0.9352
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	8.48	0.9308
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	9.48	0.9341
AT1G03100			Pentatricopeptide repeat (PPR)...		Potri.005G212400 [exp]	9.79	0.9086

Compare expression of checked genes

Potri.002G014800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.