Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03190 196 / 2e-63 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT2G30860 192 / 4e-62 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 187 / 6e-60 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT2G47730 182 / 2e-57 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT5G17220 171 / 8e-54 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G62760 164 / 1e-50 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G02950 157 / 1e-47 GST31, ATGSTF4 GLUTATHIONE S-TRANSFERASE 31, glutathione S-transferase F4 (.1.2.3.4) AT4G02520 155 / 2e-47 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT2G02930 151 / 5e-46 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT1G02920 150 / 2e-45 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G015200 [exp] 352 / 9e-125 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.017G138800 [exp] 194 / 9e-63 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G207093 [exp] 174 / 9e-55 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.014G132200 [exp] 173 / 2e-54 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G207672 [exp] 172 / 5e-54 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.002G207479 [exp] 167 / 3e-52 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 166 / 9e-52 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.004G232600 [exp] 58 / 4e-10 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.004G226300 [exp] 57 / 2e-09 AT1G57720 323 / 3e-107 Translation elongation factor EF1B, gamma chain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004151 [exp] 304 / 9e-106 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10005634 [exp] 261 / 9e-89 AT2G30860 177 / 1e-55 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 202 / 6e-66 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 202 / 1e-65 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 196 / 1e-63 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 196 / 2e-63 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10020736 [exp] 192 / 7e-62 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 191 / 1e-61 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10023511 [exp] 175 / 6e-55 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Lus10026643 [exp] 171 / 2e-53 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF00043 [poplar] [flax] GST_C Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF02798 [poplar] [flax] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G015100.1 pacid=42776796 polypeptide=Potri.002G015100.1.p locus=Potri.002G015100 ID=Potri.002G015100.1.v4.1 annot-version=v4.1 ATGGCAACTCCGGTGACTATTTACGGACCACCATTGTCCACAGCAGTGTCTAGAGTCCTAGCTACTCTGATCGAGAAAGACGTGCCCTTTCACCTCGTTC CCATTGACCTCTCCAAAGGTGAACAGAAGAAGCCTGAGTACCTCAAGATCCAGCCCTTTGGCCAAGTACCAGCTTTTAAAGACGAGAGCATCACCCTCTT TGAGTCAAGAGCAATATGCAGGTACATATGTGACAAATATGCTGACAAGGGAAACAGGAGCTTATACGGCACAGACATCTTATCAAAAGCAAATATAGAT CAATGGGTAGAAACTGATGGGCAGACTTTCGGTCCACCAAGCGGGGACTTGGTGCATGACCTTCTATTTAGTAGTGTCCCAGTAGACGAAGCCTTGATAA AGAAGAACGTAGATAAGTTGGCGAAAGTGCTTGACATTTACGAGCAGAAGCTTGGACAGACTCGGTTTTTGGCTGGAGATGAATTTTCTTTTGCTGATCT TTCACACCTGCCTAATGGGGACTACTTGGTGAATTCAACTGACAAGGGATACCTGTTTACTTCCAGGAAGAATGTAAACAGGTGGTGGACTGAGATTTCT AACAGGGAATCCTGGAAGAAGGTTCTTGAAATGAGGAAAAATGCTTGA
AA sequence Show only first row Show all	>Potri.002G015100.1 pacid=42776796 polypeptide=Potri.002G015100.1.p locus=Potri.002G015100 ID=Potri.002G015100.1.v4.1 annot-version=v4.1 MATPVTIYGPPLSTAVSRVLATLIEKDVPFHLVPIDLSKGEQKKPEYLKIQPFGQVPAFKDESITLFESRAICRYICDKYADKGNRSLYGTDILSKANID QWVETDGQTFGPPSGDLVHDLLFSSVPVDEALIKKNVDKLAKVLDIYEQKLGQTRFLAGDEFSFADLSHLPNGDYLVNSTDKGYLFTSRKNVNRWWTEIS NRESWKKVLEMRKNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Potri.002G015100 [exp]	0	1
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Potri.010G149400 [exp]	2.00	0.8886
AT4G00400		AtGPAT8, GPAT8	glycerol-3-phosphate acyltrans...		Potri.014G085500 [exp]	4.00	0.9110
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Potri.014G085800 [exp]	9.21	0.9185	Pt-CYP86.6
AT1G01380	MYB	ETC1	ENHANCER OF TRY AND CPC 1, Hom...		Potri.004G021300 [exp]	17.20	0.7838
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	17.66	0.8756	Pt-LACS2.2
AT5G20110			Dynein light chain type 1 fami...		Potri.001G124700 [exp]	18.24	0.8481
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Potri.018G074500 [exp]	19.13	0.8887
AT3G14225		GLIP4, EMB1474	GDSL-motif lipase 4 (.1)		Potri.007G133700 [exp]	28.98	0.8700
AT1G29730			Leucine-rich repeat transmembr...		Potri.016G012300 [exp]	30.85	0.8761
AT5G54010			UDP-Glycosyltransferase superf...		Potri.011G061000 [exp]	36.66	0.8054

Compare expression of checked genes

Potri.002G015100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.