Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38470 650 / 0 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 648 / 0 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 634 / 0 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 264 / 6e-83 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 254 / 5e-79 Protein kinase superfamily protein (.1) AT1G62400 251 / 6e-79 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G01850 231 / 3e-71 Protein kinase superfamily protein (.1) AT5G58950 234 / 3e-70 Protein kinase superfamily protein (.1) AT5G49470 227 / 8e-68 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT5G50180 222 / 1e-67 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246500 [exp] 909 / 0 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 686 / 0 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 681 / 0 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 671 / 0 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 647 / 0 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 578 / 0 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 567 / 0 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 451 / 9e-154 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 447 / 4e-152 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004153 [exp] 697 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 679 / 0 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 672 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10012517 [exp] 668 / 0 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10041845 [exp] 611 / 0 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 601 / 0 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10005630 [exp] 594 / 0 AT4G38470 514 / 8e-179 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 452 / 1e-153 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 450 / 2e-153 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028392 [exp] 349 / 5e-116 AT4G35780 445 / 2e-153 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G015400.2 pacid=42778803 polypeptide=Potri.002G015400.2.p locus=Potri.002G015400 ID=Potri.002G015400.2.v4.1 annot-version=v4.1 ATGGGAGACACCGAGAGTTGCAGCAGCAGAGCAGTAGATTTCGTGCCTCGAAACCAGAGGCAAAAACTCGATGTTTTCAACGATGTTCTTTGTCATCTTA AAGAATCGAATGACAAAGAAGCGACTCGTCCTGGCTTCGAAAATGAACTCTGGACTCATTTCTGTAGACTTCCTGCTCGGTATGCAATGGATGTGAATGC GGAGAGAGCACAAGATGTTATTATGCACAAGAGGTTGTTGCAGATGGCACGTAATCCAGCTACTCGGCCGGCGATTGAAGTGCGGCTTGTTCAGGTTCCT TCTGCATATAATGGACATTCTGGTGATTCGGTAGATTCAGACCCTCCAAGGAAATTGCAGCTCCAATATTTTGATTATCTCGAGAAACAGAGCATTCATC CACCTCCAGCCTTTGGTTCATTGACTGATTTTGAACTTCTTCATAAAAATCAGAATGACGATATCACTGCGTTTACCAGGCTGATGCATGAAATTACAAT TTCAACTAATGATAAGCCAAAACTCCTGAGTCAGTTGACTTCCTTGCTGTCTGAGATTGGGCTCAACATTCAGGAAGCTCATGCTTTTTCCACAGTAGAT GGCTACTCCTTGGATGTTTTTGTTGTTAATAATTGGGAACCCGAGGACACAGAGCGGCTTAGAAGCATGCTGGTTAAGGAAATTCCCAAAATCGAGAAGA ATGCTGTTTATCCTGTGGCGGAGCAAGATCAAAGAGGAATCCGCCTTGTCTCTAGTCACATGAACGTTCCCGCTGACTCAATTGATGTTTGGGAAATTGA TGCACACCGGTTATTATTTGAGAGAAAAATTGCAACTGGATCTAGTGGAGATCTGTACAAAGGCACCTTCTGCAGTCAAGATGTGGCTATTAAAGTGCTT AGGGGTGAGCATCTAGATGATAAACTTCAGAGTGAATTTGTTCAAGAAGTCTCTATCATGAGGAAAGTTCGTCACAAGAATGTTGTGCAATTCATAGGTT CATGCACCAGACCTCCAAGCCTGTGCATCGTGACAGAATTTATGTCTGGTGGAAGCATGTATGACTTTCTGCATAAACAGAAGGGAAGTTTAAATCTTCA GTCTTTACTACGAGTAGCAATTGATGTCTCCAAGGGAATGCACTGCTTGAACCAAAATCATATAATACATCGAGATTTGAAATCTGCCAATATCTTGATG GATGAAAATGGAGTAGTTAAAGTTGCTGATTTTGGTGTTGCTAGAGTGCAAGATCAGACTGGTGTGATGACTGCAGAAACTGGAACTTACCGCTGGATGG CTCCAGAGGTTATTGAACACAAGCCATATGATCATAAAGCAGATGTTTTCAGTTTTGGCATTGTGCTGTGGGAGTTGCTTACTGGAAAGCTTCCATATGA GCAGTTGTCCCCGTTACAAGCGGCAGTTGGCGTGGTCCAGCAGGGTCTAAGACCATCAATTCCAAGCCATTCTCATCCTAAATTGGTAGGCCTGCTTAAG AGATGCTGGCAGCGAGACCCGTTTTTGAGACCTGAATTCTCTGAAATTTTAGAGCTTCTACAGCAATTAGAGAGAACGGTTGCTGATGAAAGAGACGACA AGCAGAAAGGAAAGTCTCCTAGAAGGGCTGTGATTGCCAATTAG
AA sequence Show only first row Show all	>Potri.002G015400.2 pacid=42778803 polypeptide=Potri.002G015400.2.p locus=Potri.002G015400 ID=Potri.002G015400.2.v4.1 annot-version=v4.1 MGDTESCSSRAVDFVPRNQRQKLDVFNDVLCHLKESNDKEATRPGFENELWTHFCRLPARYAMDVNAERAQDVIMHKRLLQMARNPATRPAIEVRLVQVP SAYNGHSGDSVDSDPPRKLQLQYFDYLEKQSIHPPPAFGSLTDFELLHKNQNDDITAFTRLMHEITISTNDKPKLLSQLTSLLSEIGLNIQEAHAFSTVD GYSLDVFVVNNWEPEDTERLRSMLVKEIPKIEKNAVYPVAEQDQRGIRLVSSHMNVPADSIDVWEIDAHRLLFERKIATGSSGDLYKGTFCSQDVAIKVL RGEHLDDKLQSEFVQEVSIMRKVRHKNVVQFIGSCTRPPSLCIVTEFMSGGSMYDFLHKQKGSLNLQSLLRVAIDVSKGMHCLNQNHIIHRDLKSANILM DENGVVKVADFGVARVQDQTGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEQLSPLQAAVGVVQQGLRPSIPSHSHPKLVGLLK RCWQRDPFLRPEFSEILELLQQLERTVADERDDKQKGKSPRRAVIAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.002G015400 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.001G007700 [exp]	2.00	0.8337
					Potri.010G173050 [exp]	2.00	0.8230
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Potri.009G103000 [exp]	14.93	0.7256
AT3G07870			F-box and associated interacti...		Potri.008G215901 [exp]	30.33	0.8169
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.005G014600 [exp]	39.94	0.7725
AT5G15570			Bromodomain transcription fact...		Potri.017G094900 [exp]	41.80	0.7537
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.010G246200 [exp]	43.74	0.7636
AT1G15890			Disease resistance protein (CC...		Potri.011G124432 [exp]	49.29	0.7451
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Potri.019G052800 [exp]	53.21	0.7847	PIN12,PIN9.1
AT1G08800			Protein of unknown function, D...		Potri.019G007802 [exp]	59.90	0.7525

Compare expression of checked genes

Potri.002G015400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.