Plant FIBer expression Database

Potri.002G015500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G015500.2 pacid=42778578 polypeptide=Potri.002G015500.2.p locus=Potri.002G015500 ID=Potri.002G015500.2.v4.1 annot-version=v4.1
ATGGTTTCGCTAGCACTGTCGTTGGATAAGTCAACGTGGAATGGCCAGATGACAATCAAAGCTGGCTTTTCTCTCTTGCCAATTCTGCTGTTCTTCCTCA
CTTCACTACTTTCCTGTGGAGCTATCTACACTATAGAGAAATTTTATACTAGTTTTTTGCTTATGATCATGGCATATTTGTCAAATTTAATGCAGATATC
TTTGTGGGAATTGGACCAAGTTCATAAGGATTCAGAGGACTTGTTTTCTATTGCTTCGACAGCAGATGAGCATCAGATGACATTTACTCTTTCTCCTTTC
GATCAGCCACATGCCGCCGTACTGTTCCCTGTCGTATTGCCCTCCCTGGCAGCGTTTTACACCATGGAAGAGAACGTAATCGTGGGCTTGGGATTCGTGG
TTATGGCATGTGTCTCATTCTTAGCCCTGTATGGACTGTATTTTCCATCTCCTGTCAATTCACCAGCCTTTGATTTCTGGGCTGAATGGACAGGCCTGAA
ATTGTGCGAGACATTGATACCTCCTTCGCCGGAAGACAGGAGCCAGCAATTTGAAGTGCTACATCACCGTATATTGGGTCCTGAGGATGACGAGAGAGAG
AGGAGTGAGGAGAGGAGTTTGATTTCTGAAGCTGAGTATCTGGAGGAGGGAGAGGAAGGAGTTGGCGAGAACAATGTCCAAAATCAAGGGGCTGAAATTG
AAGGATTGAAAGACAAAGGACTTAAATTCGGCATTGAAATCAACGAGGACGAATGGGAATATATAAAAAACTCTTCACTTCATGCCAAAGACACCCAGAG
TGAGAGTTGA
AA sequence
>Potri.002G015500.2 pacid=42778578 polypeptide=Potri.002G015500.2.p locus=Potri.002G015500 ID=Potri.002G015500.2.v4.1 annot-version=v4.1
MVSLALSLDKSTWNGQMTIKAGFSLLPILLFFLTSLLSCGAIYTIEKFYTSFLLMIMAYLSNLMQISLWELDQVHKDSEDLFSIASTADEHQMTFTLSPF
DQPHAAVLFPVVLPSLAAFYTMEENVIVGLGFVVMACVSFLALYGLYFPSPVNSPAFDFWAEWTGLKLCETLIPPSPEDRSQQFEVLHHRILGPEDDERE
RSEERSLISEAEYLEEGEEGVGENNVQNQGAEIEGLKDKGLKFGIEINEDEWEYIKNSSLHAKDTQSES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G015500
[exp]
0 1
AT4G31980 unknown protein Potri.013G146600
[exp]
3.31 0.9212
AT3G44735 PSK1, ATPSK3 PHYTOSULFOKINE 3 PRECURSOR (.1... Potri.009G148900
[exp]
10.00 0.8830 Pt-PSK6.1
AT3G20600 NDR1 non race-specific disease resi... Potri.004G023400
[exp]
11.31 0.9075
AT1G71140 MATE efflux family protein (.1... Potri.004G093400
[exp]
12.48 0.8884
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.010G050200
[exp]
14.38 0.9035
AT3G05620 Plant invertase/pectin methyle... Potri.013G013200
[exp]
16.00 0.8913
AT2G27300 NAC NTL8, ANAC040 Arabidopsis NAC domain contain... Potri.009G161300
[exp]
18.97 0.8901
AT5G04890 RTM2 RESTRICTED TEV MOVEMENT 2, HSP... Potri.008G013900
[exp]
21.16 0.8870
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.016G012700
[exp]
21.77 0.7605
Potri.001G049700
[exp]
21.90 0.8588

Potri.002G015500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.