Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60060 63 / 6e-11 Protein of unknown function (DUF295) (.1) AT1G65770 51 / 5e-07 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT3G25750 48 / 5e-06 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G64840 46 / 2e-05 Protein of unknown function (DUF295) (.1) AT4G22170 45 / 5e-05 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17030 43 / 0.0002 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G24250 43 / 0.0002 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) AT5G24040 43 / 0.0002 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) AT4G10695 42 / 0.0003 CDC68-related (.1) AT2G17690 42 / 0.0004 SDC SUPPRESSOR OF DRM1 DRM2 CMT3, F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014500 [exp] 160 / 7e-46 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.009G140000 [exp] 80 / 1e-16 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 79 / 3e-16 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.001G277400 [exp] 62 / 2e-10 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105000 [exp] 59 / 1e-09 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.016G079300 [exp] 57 / 4e-09 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.005G105400 [exp] 57 / 9e-09 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105100 [exp] 54 / 5e-08 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.006G015601 [exp] 54 / 9e-08 AT4G22660 59 / 3e-09 F-box family protein with a domain of unknown function (DUF295) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013995 [exp] 93 / 5e-21 AT2G17030 52 / 6e-07 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10008665 [exp] 79 / 3e-16 AT5G55150 63 / 9e-11 Protein of unknown function (DUF295) (.1) Lus10023984 [exp] 72 / 8e-14 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10025100 [exp] 71 / 2e-13 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10041838 [exp] 56 / 2e-08 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10028385 [exp] 52 / 2e-07 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1) Lus10022706 [exp] 49 / 2e-06 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10022650 [exp] 48 / 4e-06 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10014208 [exp] 48 / 5e-06 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10021352 [exp] 48 / 6e-06 AT1G57790 292 / 1e-96 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [poplar] [flax] DUF295 Protein of unknown function (DUF295) CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.002G015700.1 pacid=42780172 polypeptide=Potri.002G015700.1.p locus=Potri.002G015700 ID=Potri.002G015700.1.v4.1 annot-version=v4.1 ATGTCCAGGTGGTCAGATCTTCCACCCGAGTTGCTACAACTCATAACCCAAAAGCAAACCAACTATGTTGATTACCTTTGTGTTAGAGCTGTTTGCAAAT CATGGAGATCAGCTTTACCCAAGAAACCTCATGACCTTCTCTGTCAGCTTCCATGGCTATTGCTTCCTTACCAAAACGACAGCCCAAACCACCGAGGCTT CTACAACCTTGCAGACGGAAAAACATACCGCCTGGAATTGCCTGAAGCTTATGAAAAACGGTGCTGTGGTTCTTCACATGGTTGGCTGGTTATGGTCGAG GAAACCCCCGCGATATTTCTCCTAAATCCATTAAAAAAGCCAGAATCGATCTTCCTTCACTATCCACCTTCCCTAATTAATTTCCCTACTGAAGTAGTGT TTAAAAATTCACGGAACCTGCATCCGAGTTCCATTAGGTCGTCCAAACAACGTCCAAGAGACAGGTTTATAAGAAAAGTCAGAGTGTCCGCTGATCCTTC CTTGGTTTCCAACTTCATGTTGATAAAGTGGGAAGAAGTTTCAATCTGTAAAACAGACAATCCTCCATCATTGATCCATGTTGCAGATCCACCGCCTGTA CCACCAAAAATGGGATACAAGCAATGGTACTTGGCAAACTTAAATGGAAGTCTTTTATTGGTAGGTCGGATCAGGGAATATCATGTTCCTGTTTATGGAT ACGAAACTTTCAGTTTTGTGGCTTACAAGCTAGAGAGAGAGGAATCAAAGTTGTCAGACGTAGAGAGTTTGGGGGATAAAATGTTGTTTTTGGGCTGGAA TTGCTCACACTCTGTATCAGCTCTGGATTTCAACAAATGCAAAGGTGATTGCATTTATTTTACTGATGATAATCTTATGGTCTGTGCTGATTTCATATGG GAGGGTCACGACTTCGGCGTTTTTGACTTCCACGGTGGAAATGTCCGACGTCTAGGATTACCCTTGTAA
AA sequence Show only first row Show all	>Potri.002G015700.1 pacid=42780172 polypeptide=Potri.002G015700.1.p locus=Potri.002G015700 ID=Potri.002G015700.1.v4.1 annot-version=v4.1 MSRWSDLPPELLQLITQKQTNYVDYLCVRAVCKSWRSALPKKPHDLLCQLPWLLLPYQNDSPNHRGFYNLADGKTYRLELPEAYEKRCCGSSHGWLVMVE ETPAIFLLNPLKKPESIFLHYPPSLINFPTEVVFKNSRNLHPSSIRSSKQRPRDRFIRKVRVSADPSLVSNFMLIKWEEVSICKTDNPPSLIHVADPPPV PPKMGYKQWYLANLNGSLLLVGRIREYHVPVYGYETFSFVAYKLEREESKLSDVESLGDKMLFLGWNCSHSVSALDFNKCKGDCIYFTDDNLMVCADFIW EGHDFGVFDFHGGNVRRLGLPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60060			Protein of unknown function (D...		Potri.002G015700 [exp]	0	1
AT4G18950			Integrin-linked protein kinase...		Potri.017G123100 [exp]	1.00	0.9989
					Potri.005G122150 [exp]	7.07	0.9966
AT5G39160			RmlC-like cupins superfamily p...		Potri.001G465100 [exp]	11.13	0.9930	GER2.31
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Potri.006G179800 [exp]	11.18	0.9966	NAC140
					Potri.008G070501 [exp]	13.22	0.9966
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213223 [exp]	14.69	0.9957
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Potri.016G005600 [exp]	15.81	0.9966
AT3G02100			UDP-Glycosyltransferase superf...		Potri.017G091500 [exp]	15.87	0.9953
					Potri.003G096450 [exp]	17.32	0.9966
					Potri.008G073450 [exp]	18.70	0.9966

Compare expression of checked genes

Potri.002G015700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.