Plant FIBer expression Database

Potri.002G015800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11880 54 / 1e-07 Pyridoxal-dependent decarboxylase family protein (.1)
AT3G14390 50 / 1e-06 Pyridoxal-dependent decarboxylase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G246300
[exp]
638 / 0 AT3G14390 58 / 6e-09 Pyridoxal-dependent decarboxylase family protein (.1)
Potri.009G119300
[exp]
50 / 1e-06 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1)
Potri.004G157500
[exp]
50 / 2e-06 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004154
[exp]
379 / 1e-130 AT5G11880 53 / 2e-07 Pyridoxal-dependent decarboxylase family protein (.1)
Lus10005629
[exp]
265 / 3e-88 ND /
Lus10042305
[exp]
52 / 3e-07 AT5G11880 806 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1)
Lus10023548
[exp]
47 / 2e-05 AT5G11880 809 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1)
Lus10040433
[exp]
46 / 4e-05 AT5G11880 813 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00278 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain
CL0036 TIM_barrel PF02784 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Representative CDS sequence
>Potri.002G015800.1 pacid=42780027 polypeptide=Potri.002G015800.1.p locus=Potri.002G015800 ID=Potri.002G015800.1.v4.1 annot-version=v4.1
ATGCGGTCAATAATTTCTAAGGAACAAGAAACCAAAGAGCCCTTTTACGTACTAGATTTAGGAGTGGTGTCTGCCCTCTTAGACAAGTGGACACGTACCC
TTCCCATAGTACGTCCCTTTTACGCCGTCAAGTACAATCCTGTACCAGCTCTACTCGGTTCATTGGCGGCTCTTAGCTCAAACTTTGATTGTGCTAGCCA
GGCCGAGATAGAATTGGTTTTATCTCTGGGAGTCTCTCTGGACCGAATCGTTTATGCGAATCCATGCAAGCCAGGGTCACACATCAAATACGCAGCCAGC
GTGGGTGTCAATTTAACTACATTTGATTCGAAAGAAGAGCTCGACAAAATTCAAAAATGGCATCCGAAATGTGCATTGCTCATTCGGATTAAAGCCCTTG
ATGATAGTAGAGCAAGGTGTCTATTGGGTTCCAAATATGGCGCGCTTCCTGAAGAAGTCACACCTTTTCTCGAAGCCGCTCAAATGGCTAGGCTCAATGT
TGTTGGTGTTTCGTTCCATATAGGAAACAGAGCCACATATTCTCAAGCATACGAAGGAGCCATAGCTTCGGCTAAATCTGTATTTGAAGCCGCAGCTCGT
TTTGGCATGCCTAGAATGACGATACTGAACATCGGCGGCGGCTTCACCGCTGGATCCCTATTTGACGAAGCGGCTACATCAATTAAACCCGCCCTGCAAG
CTTATTTCCCAAATGAACCGGGCCTAACCATCATTTCTGAGCCGGGTCGTTTTTTTGCTGAGTCGCCTTTCACATTAGCCACCAACGTTATAGGAAAACG
TGTTAGAGGAGAGTTAAGAGAGTATTGGATTAATGACGGTATTTACGGCTCCCTGAACTGTATTTTAAATGATCATGCAACTATCACATGCACACCTCTA
GCTTGCAATTCTAACAGTGCGAATCCCACGTGCAAAGGAGAAAAGAGCTACAGTTCGATGGTTTTCGGACCGACGTGTGATGCTCTTGACACGGTTTTGA
CGGTTCATCAGTTGCCGGAATTGCAGGTTGATGACTGGCTTGTGTTCCCTAATATGGGTGCTTATACAGCGGCTGCTGGGTCAAGTTTCAATGGGTTTAA
CACAGCTGCTATTTTGACTTACCTTTCCTACTCGAATCTGAGCTAG
AA sequence
>Potri.002G015800.1 pacid=42780027 polypeptide=Potri.002G015800.1.p locus=Potri.002G015800 ID=Potri.002G015800.1.v4.1 annot-version=v4.1
MRSIISKEQETKEPFYVLDLGVVSALLDKWTRTLPIVRPFYAVKYNPVPALLGSLAALSSNFDCASQAEIELVLSLGVSLDRIVYANPCKPGSHIKYAAS
VGVNLTTFDSKEELDKIQKWHPKCALLIRIKALDDSRARCLLGSKYGALPEEVTPFLEAAQMARLNVVGVSFHIGNRATYSQAYEGAIASAKSVFEAAAR
FGMPRMTILNIGGGFTAGSLFDEAATSIKPALQAYFPNEPGLTIISEPGRFFAESPFTLATNVIGKRVRGELREYWINDGIYGSLNCILNDHATITCTPL
ACNSNSANPTCKGEKSYSSMVFGPTCDALDTVLTVHQLPELQVDDWLVFPNMGAYTAAAGSSFNGFNTAAILTYLSYSNLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11880 Pyridoxal-dependent decarboxyl... Potri.002G015800
[exp]
0 1
AT1G62280 SLAH1 SLAC1 homologue 1 (.1) Potri.008G084901
[exp]
16.03 0.5843
AT4G21410 CRK29 cysteine-rich RLK (RECEPTOR-li... Potri.011G028700
[exp]
19.49 0.5639
AT2G35615 Eukaryotic aspartyl protease f... Potri.003G105300
[exp]
22.75 0.5627
Potri.001G022150
[exp]
23.74 0.5745
AT2G33100 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, ce... Potri.003G177800
[exp]
27.45 0.5073 ATCSLD1.1
AT1G77410 BGAL16 beta-galactosidase 16 (.1) Potri.004G036000
[exp]
29.54 0.5572
AT5G28780 PIF1 helicase (.1) Potri.011G042150
[exp]
36.27 0.5453
AT5G26594 ARR24 response regulator 24 (.1) Potri.019G024900
[exp]
37.54 0.5453
AT3G19280 FUCTA, FUCT1, A... fucosyltransferase 11 (.1) Potri.019G091200
[exp]
38.78 0.5453 FUCT3.1
Potri.010G007833
[exp]
59.89 0.5207

Potri.002G015800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.