Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27280 219 / 2e-72 Zim17-type zinc finger protein (.1) AT1G68730 81 / 5e-19 Zim17-type zinc finger protein (.1) AT3G54826 45 / 9e-06 Zim17-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246200 [exp] 301 / 9e-105 AT5G27280 225 / 5e-75 Zim17-type zinc finger protein (.1) Potri.010G132400 [exp] 74 / 1e-16 AT1G68730 139 / 1e-42 Zim17-type zinc finger protein (.1) Potri.008G037300 [exp] 49 / 5e-07 AT3G54826 173 / 2e-54 Zim17-type zinc finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021838 [exp] 247 / 2e-83 AT5G27280 216 / 3e-71 Zim17-type zinc finger protein (.1) Lus10034555 [exp] 244 / 4e-82 AT5G27280 216 / 2e-71 Zim17-type zinc finger protein (.1) Lus10034401 [exp] 74 / 1e-16 AT1G68730 130 / 1e-38 Zim17-type zinc finger protein (.1) Lus10019154 [exp] 72 / 1e-16 AT1G68730 119 / 2e-35 Zim17-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05180 [poplar] [flax] zf-DNL DNL zinc finger
Representative CDS sequence Show only first row Show all	>Potri.002G015900.3 pacid=42780046 polypeptide=Potri.002G015900.3.p locus=Potri.002G015900 ID=Potri.002G015900.3.v4.1 annot-version=v4.1 ATGGAAGCTCTAAGTTCCTCCGCCGCAATCTCCTCCTCTCTCTCCTCCTTTTCTCCAAAACGAAAGGAACTGAATACTCCTACCATACTCCTCCGATTCC ACGTTTCTTCGAAAAAGGATAAGAAAGATTCGGATCTCCAGTCCAGCTCTCACGATTCCAGCATCGTCCCTCTCTTCAACAACCCCTCTTTCTCCAAGGA TGCGGCGATGGGATTGGTATTGAGTGCGGCATCGGTGAGAGGATGGACTACAGGGTCAGGCATGGAAGGACCTTCAGTGACAGCTGTGTCCGAGGACGGA TTCAATACGGAGAAAGTCTCGACTCTCCCGTGGTCTCTCTTCACGAAATCTCCACGTAGGCGAATGCGCGTGGCCTTCACTTGTAATGTTTGTGGTCAAA GAACTACTCGCGCTATCAATCCCCATGCTTACACTGATGGCACTGTCTTCGTTCAGTGTTGCGGTTGCAATGTGTTTCATAAGCTAGTGGATAATTTGAA CTTGTTTCATGAGATGAAGTGCTACGTGAACCCGGGCTTTAATTATCGAGACGCTAAATGGGATGGTGGATTCAAGTTGTTTGATGTGGATGATGATCGA GATGATGGTGGTAGCGATGTGTTTCCGATCTAA
AA sequence Show only first row Show all	>Potri.002G015900.3 pacid=42780046 polypeptide=Potri.002G015900.3.p locus=Potri.002G015900 ID=Potri.002G015900.3.v4.1 annot-version=v4.1 MEALSSSAAISSSLSSFSPKRKELNTPTILLRFHVSSKKDKKDSDLQSSSHDSSIVPLFNNPSFSKDAAMGLVLSAASVRGWTTGSGMEGPSVTAVSEDG FNTEKVSTLPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPGFNYRDAKWDGGFKLFDVDDDR DDGGSDVFPI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27280			Zim17-type zinc finger protein...		Potri.002G015900 [exp]	0	1
AT5G38900			Thioredoxin superfamily protei...		Potri.017G100000 [exp]	4.24	0.8891
AT1G68660			Ribosomal protein L12/ ATP-dep...		Potri.008G117800 [exp]	4.58	0.9094
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Potri.001G439000 [exp]	7.74	0.8352	REV7.2
AT2G04230			FBD, F-box and Leucine Rich Re...		Potri.004G020200 [exp]	9.16	0.8359
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.006G265600 [exp]	12.32	0.7873
AT1G77122			Uncharacterised protein family...		Potri.002G071700 [exp]	14.96	0.8639
AT1G76050			Pseudouridine synthase family ...		Potri.002G016800 [exp]	26.72	0.8542
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.004G179628 [exp]	28.28	0.8373
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Potri.003G074900 [exp]	31.93	0.8769
AT1G68660			Ribosomal protein L12/ ATP-dep...		Potri.010G128500 [exp]	32.63	0.8689

Compare expression of checked genes

Potri.002G015900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.