Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16980 384 / 5e-130 Major facilitator superfamily protein (.1.2) AT2G16990 380 / 7e-129 Major facilitator superfamily protein (.1.2) AT2G16970 352 / 9e-118 MEE15 maternal effect embryo arrest 15, Major facilitator superfamily protein (.1) AT5G42210 294 / 1e-97 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245900 [exp] 769 / 0 AT2G16980 412 / 3e-141 Major facilitator superfamily protein (.1.2) Potri.004G178600 [exp] 554 / 0 AT2G16980 417 / 2e-143 Major facilitator superfamily protein (.1.2) Potri.009G138900 [exp] 517 / 0 AT2G16990 405 / 1e-138 Major facilitator superfamily protein (.1.2) Potri.008G022100 [exp] 266 / 2e-84 AT2G16980 211 / 3e-63 Major facilitator superfamily protein (.1.2) Potri.010G237300 [exp] 256 / 1e-80 AT2G16980 203 / 3e-60 Major facilitator superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005626 [exp] 630 / 0 AT2G16980 396 / 4e-135 Major facilitator superfamily protein (.1.2) Lus10004157 [exp] 617 / 0 AT2G16980 394 / 2e-133 Major facilitator superfamily protein (.1.2) Lus10023994 [exp] 479 / 1e-167 AT2G16980 412 / 2e-141 Major facilitator superfamily protein (.1.2) Lus10025087 [exp] 468 / 6e-163 AT2G16980 405 / 3e-138 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.002G016200.2 pacid=42777219 polypeptide=Potri.002G016200.2.p locus=Potri.002G016200 ID=Potri.002G016200.2.v4.1 annot-version=v4.1 ATGGAAAAGTTGTCAGGTTTAAGTCATCTCTTCATGACAATATTTCTGCATAATTTCTCAACATTTATGGTGATCCCTGCCATTACTGATGTCACAATGT CGGCCTTATGCCCTGGAAGAGATGAGTGTTCTTTGGCCATTTACCTAACCGGATTCCAACAAGCGATTATAGGGCTTGGGACGCTGGTAACGATGCCTTT GATAGGGAACATGTCGGACAAGTATGGTCGGAAAGCTTTGCTTACTGTTCCAATGAGTCTTATAATAGTTCCCTCAGCCATATTGGCCTACAGCAGGACC AGGAACTTCTTCTATGCGTATTATGTCGTCAGGACTCTCATGGCCATGGTCTGTGAAGGAAGTGTCCAATGCCTTGCTCTCGCCTATGTGGCAGACAATG TTCCGGAGAGTCGGCGAGCCTCGACGTTTGGGATTCTTTCAGGCATTGCATCGTCCGCTTTCGTATGCGGAAACCTCTCCACTCGTTTCCTCTCCACCTC CTCCACCTTCCAGGTTTCTGCCTTAGTGGCAATTGCAGCTCTAGTGTACATGAGGTTTTTTCTTCAGGAATCCATCATCGATGAACAACTCTCTACGCCA ATACTAACATATAAGGGGAACGGGAAAGGAAAAGGAAAAGCTAATGCTGCATGCTTTGCACATGAAATTCCAAGCAAAAATGTGCAGGTTTTTAAATCAG CACCTTCCTTGGAGGATATGCTCTGCTTGCTTAAGAGCAGTGTGACCCTTTCGCAAGCTGCTGTTGTTGCATTTTTCTACAGTCTTGCGGAAGTTGGCCT TCATGCTTCATTAATGTACTATTTGAAGGCGCAATTTCACTTTAGCAAGGATCAATTTGCTGTTTTGATGGTGATTTCTGGGATTGCAGGGACCGTTTCA CAGTTGGTTATTATGCCTCTATTGACTCCTGCTCTTGGAGAAGCAAGGCTGCTTGCAGTGGGGCTCTTTTTTACCTGTGTACATGTGTTTCTTTACAGCA TAGCGTGGACCTTCTGGGTACCTTATGTTGCTTCCATGTTCTCTCTTCTGTTTGTGTTTTCACAACCATGTATGCGAAGCATTGTGTCCAAGCAAGTTGG ATCCTGTGAGCAGGGGAAGGCTCAAGGGTGCATTTCTGGAATAAGTTCCTTTGCCAATGTCATTTCTCCCTTGGTTTTCTCTCCTTTAACAGCTTTATTC CTCTCTGAAAGGGCGCCGTTCCCCTTCCCTGGTTTCAGTATTATGTGCGTCGGATTTGCATCGATGATAGCCTTCATTCAGAGTCTCATGATGAGGACCG CTCCTCCCATTGCAAATCAAAAGGTCGTTAATTCCAACTATGTGGATGCCTAG
AA sequence Show only first row Show all	>Potri.002G016200.2 pacid=42777219 polypeptide=Potri.002G016200.2.p locus=Potri.002G016200 ID=Potri.002G016200.2.v4.1 annot-version=v4.1 MEKLSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGLGTLVTMPLIGNMSDKYGRKALLTVPMSLIIVPSAILAYSRT RNFFYAYYVVRTLMAMVCEGSVQCLALAYVADNVPESRRASTFGILSGIASSAFVCGNLSTRFLSTSSTFQVSALVAIAALVYMRFFLQESIIDEQLSTP ILTYKGNGKGKGKANAACFAHEIPSKNVQVFKSAPSLEDMLCLLKSSVTLSQAAVVAFFYSLAEVGLHASLMYYLKAQFHFSKDQFAVLMVISGIAGTVS QLVIMPLLTPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVASMFSLLFVFSQPCMRSIVSKQVGSCEQGKAQGCISGISSFANVISPLVFSPLTALF LSERAPFPFPGFSIMCVGFASMIAFIQSLMMRTAPPIANQKVVNSNYVDA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16980			Major facilitator superfamily ...		Potri.002G016200 [exp]	0	1
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.005G033500 [exp]	3.46	0.9049
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	5.47	0.8723
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.002G138900 [exp]	6.70	0.8369
AT1G68470			Exostosin family protein (.1)		Potri.001G382200 [exp]	7.14	0.8666
AT2G44260			Plant protein of unknown funct...		Potri.001G232500 [exp]	7.48	0.8568
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.010G027600 [exp]	7.74	0.8353
AT4G18425			Protein of unknown function (D...		Potri.004G049000 [exp]	8.12	0.7923
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Potri.004G215400 [exp]	8.12	0.8113
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.016G025600 [exp]	8.36	0.8278
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	8.66	0.8553

Compare expression of checked genes

Potri.002G016200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.