Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SMT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20330 648 / 0 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 625 / 0 SMT3 sterol methyltransferase 3 (.1) AT5G13710 268 / 7e-88 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G64970 73 / 3e-14 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT1G73600 67 / 8e-12 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G48600 62 / 2e-10 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 61 / 5e-10 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G41040 54 / 7e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G23360 48 / 3e-06 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G78140 47 / 1e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245800 [exp] 705 / 0 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.001G263700 [exp] 270 / 1e-88 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 265 / 2e-86 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.016G056000 [exp] 225 / 5e-71 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.013G077000 [exp] 77 / 1e-15 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.015G039000 [exp] 65 / 2e-11 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G047400 [exp] 65 / 2e-11 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G188600 [exp] 52 / 2e-07 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.018G120000 [exp] 51 / 5e-07 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005625 [exp] 578 / 0 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10023995 [exp] 450 / 3e-160 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10004158 [exp] 125 / 1e-35 AT1G20330 142 / 9e-43 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10029498 [exp] 120 / 1e-31 AT5G13710 380 / 2e-133 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10009537 [exp] 76 / 3e-15 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 74 / 2e-14 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10039600 [exp] 63 / 1e-11 AT5G13710 174 / 2e-54 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10031348 [exp] 61 / 7e-10 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 61 / 7e-10 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042006 [exp] 61 / 8e-10 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain CL0063 [poplar] [flax] PF08498 [poplar] [flax] Sterol_MT_C Sterol methyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G016300.1 pacid=42777034 polypeptide=Potri.002G016300.1.p locus=Potri.002G016300 ID=Potri.002G016300.1.v4.1 annot-version=v4.1 ATGGACTCTCTCGCTCTCTTCTTCACTGGGGCTCTACTAGCCGGTGGCATCTACTGGTTCGTTTGCGTTCTCGGCCCAGCCGAGCAGAAAGGCAAACGGG CAGTAGATCTATCCGGTGGCTCCATCTCGGCCGAGAATGTCCAAGATAACTACGATCAATACTGGTCTTTTTTCCGCCGTCCCAAAGAAATCGAAACAAC TGAAAAGGTCCCTGATTTTGTTGACACATTTTACAATTTAGTCACTGATATTTACGAGTGGGGATGGGGTCAGTCCTTCCACTTCTCTCCATCCATTCCC GGAAAGTCCCACAGTGAAGCCACGCGCCTACACGAAGAGATGGCCGTGGATCTGATCAATGTCAAGCCTGGAGATCGAATCCTGGATGTCGGATGTGGTG TTGGTGGTCCGATGCGTGCTATTGCTGCACATTCACGCGCTAAGGTTGTCGGCATCACCATCAACGATTATCAAGTGAATCGTGCGCGCACGCACAACAA GAAAGCCGGGTTAGATTCACTTTGTGAAGTTGTTCAAGGAAATTTCCTAGAGATGCCGTTTCCTGAGAACAGCTTCGACGGAGCTTACTCGATCGAAGCG ACATGTCACGCGCCGAAACTCGAAGAGGTTTATGCAGAGATCTTTAGGGTCTTGAAGCCTGGATCTCTTTACGTGTCCTATGAATGGGTCACAACTGATA AGTACAAGGATTCTGACCCTGAACACGTGGAGGTTATTCAAGGTATTGAAAGAGGTGATGCTTTGCCTGGGCTAAGAAACTATACTGATATTGCAGAGAC AGCAAGGAAGGTAGGATTTGAAGTTGTGAAAGAGAAAGACTTGGCTAAACCACCAGCACAGCCATGGTGGACTAGGCTTAAGATGGGAAGGATTGCTTAC TGGAGAAACCACATTGTTGTAACAGTACTTTCCGCTGTAGGGATTGCACCAAAAGGGACTGTTGATGTTCATGAGATGCTGTTTAAGACAGCTGATTACC TTACCAAGGGTGGTGATTCTGGGATTTTCACTCCTATGCATATGATTCTCTGCAGAAAACCTGAGAAGAAGACAGAAGCGGCTTCAAATTCTTAG
AA sequence Show only first row Show all	>Potri.002G016300.1 pacid=42777034 polypeptide=Potri.002G016300.1.p locus=Potri.002G016300 ID=Potri.002G016300.1.v4.1 annot-version=v4.1 MDSLALFFTGALLAGGIYWFVCVLGPAEQKGKRAVDLSGGSISAENVQDNYDQYWSFFRRPKEIETTEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIP GKSHSEATRLHEEMAVDLINVKPGDRILDVGCGVGGPMRAIAAHSRAKVVGITINDYQVNRARTHNKKAGLDSLCEVVQGNFLEMPFPENSFDGAYSIEA TCHAPKLEEVYAEIFRVLKPGSLYVSYEWVTTDKYKDSDPEHVEVIQGIERGDALPGLRNYTDIAETARKVGFEVVKEKDLAKPPAQPWWTRLKMGRIAY WRNHIVVTVLSAVGIAPKGTVDVHEMLFKTADYLTKGGDSGIFTPMHMILCRKPEKKTEAASNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.002G016300 [exp]	0	1	Pt-SMT1.1
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.015G060000 [exp]	3.31	0.7634
AT3G49220			Plant invertase/pectin methyle...		Potri.012G014500 [exp]	3.74	0.6322
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.006G095800 [exp]	17.46	0.6376	CAC3.1
AT5G18850			unknown protein		Potri.010G026900 [exp]	17.49	0.6324
AT5G44670			Domain of unknown function (DU...		Potri.001G074600 [exp]	18.76	0.6224
AT3G26935			DHHC-type zinc finger family p...		Potri.015G101900 [exp]	21.16	0.6107
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	25.88	0.6267	Pt-CESA1.2
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Potri.006G181700 [exp]	29.39	0.6658
AT5G49810		MMT	methionine S-methyltransferase...		Potri.004G229800 [exp]	38.01	0.5372	Pt-MMT.1,MMT
AT2G30050			transducin family protein / WD...		Potri.015G068900 [exp]	45.60	0.5664

Compare expression of checked genes

Potri.002G016300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.