Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76070 116 / 4e-31 unknown protein AT1G20310 98 / 2e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245600 [exp] 383 / 1e-135 AT1G76070 97 / 1e-23 unknown protein Potri.005G107500 [exp] 94 / 2e-23 AT1G76070 57 / 1e-09 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005623 [exp] 149 / 2e-43 AT1G76070 116 / 2e-30 unknown protein Lus10017246 [exp] 144 / 1e-39 AT5G50410 186 / 7e-55 unknown protein Lus10034552 [exp] 114 / 5e-31 AT1G76070 66 / 5e-13 unknown protein Lus10021840 [exp] 91 / 2e-23 AT1G76070 59 / 1e-11 unknown protein Lus10041856 [exp] 49 / 2e-06 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G016500.1 pacid=42777508 polypeptide=Potri.002G016500.1.p locus=Potri.002G016500 ID=Potri.002G016500.1.v4.1 annot-version=v4.1 ATGGAGAAACAAGCAGCAGCACCACCAAATAGGATCCTGAAATTTCTACCCAAAGCTGCTTCTGCGGTCAACTTCCATAACCTTGCATTTAGCCCAGGAA GAGACAGGAGATCAGAAATCATACACAAGCACAAAGCCAATGTGGGAAAAGGATTTAATCCTTGCAGGTCGATGATCCCAGTTGAAGTTAGAAGACAGCC CAAGAATGAGAGCTTTGAGACCCAAGAAGAACCCACCTCACCAAAGATCTCGTGTATGGGCCAAATCAAGCACAAGAAGAAGATGAACAAGGCTACTTAT AAGCGTGTTTCACTTCCTCAGGAAACAAAGCCTGCGTCACAGACTCAACGTCAGGTAATGAAGCATGCATCTAAACTCAAGAGACTCTTTACTGGATCAA AAGCAGGAAGGAAATCTAATGCTTTTGATGGTGGTAAGCCAACACTTCCTGATAGAGCACCTTCATTAAGTCAAATGAAAAGGTTTGCAAGTGGTCGTGA TACTCTGGCAAGTTTTGATTGGACCGCTCATCAGATTGCACCAGTGGAACCTGTTGGCAGGGACTATTATTCTGATGAAGAGAGGGGAGATAGCTTTGAA GATCAAGAAGATGAAGAGGTTATAATTCCTTTCTCGGCACCTATGGTGCTAGGTGGAGGAGTAGATTTGCTACCAAGGAAAGAAGTTAATCTTTGGAAGA GAAGAACCATGGATCCACCTGAGCCTCTTCGATTGAAATCCAGTATGGTTAGAGCAAATTAA
AA sequence Show only first row Show all	>Potri.002G016500.1 pacid=42777508 polypeptide=Potri.002G016500.1.p locus=Potri.002G016500 ID=Potri.002G016500.1.v4.1 annot-version=v4.1 MEKQAAAPPNRILKFLPKAASAVNFHNLAFSPGRDRRSEIIHKHKANVGKGFNPCRSMIPVEVRRQPKNESFETQEEPTSPKISCMGQIKHKKKMNKATY KRVSLPQETKPASQTQRQVMKHASKLKRLFTGSKAGRKSNAFDGGKPTLPDRAPSLSQMKRFASGRDTLASFDWTAHQIAPVEPVGRDYYSDEERGDSFE DQEDEEVIIPFSAPMVLGGGVDLLPRKEVNLWKRRTMDPPEPLRLKSSMVRAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76070			unknown protein		Potri.002G016500 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	3.00	0.9405	OMT1.1
AT5G47180			Plant VAMP (vesicle-associated...		Potri.003G082500 [exp]	5.47	0.8986
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	5.65	0.9375
AT1G10720			BSD domain-containing protein ...		Potri.014G014200 [exp]	7.41	0.9301
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.002G226900 [exp]	7.93	0.8764
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.004G007600 [exp]	8.77	0.9170
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.006G033300 [exp]	9.16	0.9309	C3H1,CYP98.1
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	9.32	0.9324
AT4G16400			unknown protein		Potri.016G007101 [exp]	9.53	0.8573
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.012G119600 [exp]	10.39	0.9013

Compare expression of checked genes

Potri.002G016500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.