Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EMB1793.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76060 195 / 6e-65 EMB1793 EMBRYO DEFECTIVE 1793, LYR family of Fe/S cluster biogenesis protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005621 [exp] 181 / 3e-59 AT1G76060 202 / 2e-67 EMBRYO DEFECTIVE 1793, LYR family of Fe/S cluster biogenesis protein (.1) Lus10017248 [exp] 176 / 4e-57 AT1G76060 194 / 3e-64 EMBRYO DEFECTIVE 1793, LYR family of Fe/S cluster biogenesis protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0491 [poplar] [flax] LYR-like PF05347 [poplar] [flax] Complex1_LYR Complex 1 protein (LYR family)
Representative CDS sequence Show only first row Show all	>Potri.002G016600.1 pacid=42776745 polypeptide=Potri.002G016600.1.p locus=Potri.002G016600 ID=Potri.002G016600.1.v4.1 annot-version=v4.1 ATGGCTATGAAGCTGCAAAAATGGCGAAGTCTATCTTCCTCTCTATACATGATAAATCGAAGCTGCGTCGTTTTCAATCAACGTCTATTACACGAAGGCC CAGACACCTTAGAAGAACTACTAGACAGACATTTAGTGAAGAAAGAGAAATCATTTGACGAGGAAGAAGAAGAGATTCTGAATCAGCGGCGATTAACCAG CACGCGACGTGAAGCTCTGCATTTATACCGAGACATCTTGAGGGCCACCCGGTACTATATGTGGCCCGATTCGCGAGGAGTGCTGTGGAGAGATGTATTG AGGGAGAATGCGAGGAAGGAGTTTGAAGAGGCCCGGTTTGAAAAAGACCCGGAAATTGTGACCCGGTTGCTCATTGGCGGGAGAGAGGCTGTAGAATCGG CGATTGATAAACTTGTTGAGAAGCAGAGAGAGCAGATTGAGAAAGAACGTCGCGGCGGCGGAGGGAATCGTTGA
AA sequence Show only first row Show all	>Potri.002G016600.1 pacid=42776745 polypeptide=Potri.002G016600.1.p locus=Potri.002G016600 ID=Potri.002G016600.1.v4.1 annot-version=v4.1 MAMKLQKWRSLSSSLYMINRSCVVFNQRLLHEGPDTLEELLDRHLVKKEKSFDEEEEEILNQRRLTSTRREALHLYRDILRATRYYMWPDSRGVLWRDVL RENARKEFEEARFEKDPEIVTRLLIGGREAVESAIDKLVEKQREQIEKERRGGGGNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Potri.002G016600 [exp]	0	1	Pt-EMB1793.1
AT1G04290			Thioesterase superfamily prote...		Potri.004G134066 [exp]	4.24	0.8412
AT2G04520			Nucleic acid-binding, OB-fold-...		Potri.014G160900 [exp]	6.63	0.8075
AT1G79200			unknown protein		Potri.007G068500 [exp]	9.38	0.7592
AT1G76200			unknown protein		Potri.002G012700 [exp]	11.83	0.8244
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Potri.008G089900 [exp]	12.12	0.8118
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Potri.009G087000 [exp]	13.96	0.8224	SMH901
AT3G02340			RING/U-box superfamily protein...		Potri.001G185200 [exp]	14.69	0.8153
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Potri.015G052800 [exp]	17.20	0.7656	DR1.1
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G013700 [exp]	17.32	0.7926
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Potri.010G122300 [exp]	17.49	0.8002

Compare expression of checked genes

Potri.002G016600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.