Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TIF3.10
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56150 1096 / 0 ATTIF3C1, ATEIF3C-1, TIF3C1, EIF3C eukaryotic translation initiation factor 3C (.1.2) AT3G22860 898 / 0 ATTIF3C2, ATEIF3C-2, TIF3C2 EUKARYOTIC INITIATION FACTOR 3C-2, eukaryotic translation initiation factor 3 subunit C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245100 [exp] 1386 / 0 AT3G56150 1079 / 0.0 eukaryotic translation initiation factor 3C (.1.2) Potri.016G063500 [exp] 1337 / 0 AT3G56150 1017 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039984 [exp] 1166 / 0 AT3G56150 1176 / 0.0 eukaryotic translation initiation factor 3C (.1.2) Lus10027702 [exp] 1155 / 0 AT3G56150 1188 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain CL0123 [poplar] [flax] PF05470 [poplar] [flax] eIF-3c_N Eukaryotic translation initiation factor 3 subunit 8 N-terminus
Representative CDS sequence Show only first row Show all	>Potri.002G016900.2 pacid=42779361 polypeptide=Potri.002G016900.2.p locus=Potri.002G016900 ID=Potri.002G016900.2.v4.1 annot-version=v4.1 ATGGCATCGCGTTTCTGGACACAGGGTGATAGTGAATCTGACGAGGAGAGCGATTATGGAGATGAGGTTGAGGATGGAGAAGCTGGGGAGTCGACTGCCC CAGCAACTGTGGATAATAAGTATCTTAGAGGAAATGCTAGTGATAGTGATGAATCTGATGATCAAAAGCGTGTGGTCAGGTCAGCCAAAGACAAGCGTTT TGAGGAGATGTCAGCCACTGTTGATCAAATGAAGAATGCTATGAAGATTAATGATTGGGTCAGCTTGCAAGAGAGTTTCGATAAGATTAATAAGCAACTT GAGAAAGTCATGCGGGTGATGGAGTCTGAGAAGGTTCCAACCCTTTACATTAAAGCTCTGGTAATGCTGGAAGATTTCTTGAATCAGGCTTTGGCAAATA AGGAAGCTAAAAAGAAAATGAGCAGTAGCAATGCCAAGGCTTTGAATGCAATGAAACAGAAATTGAAGAAAAATAATAAACAATATGAAGATCAGATTAA TAAGTACAGGGAACACCCTGAAAGTGAGGAAGAACCAGAGGCTGACGAGGACTCGGAAGAGGAGGAAGAGTCGGATGTGGAGGAGGACCCTTCAAAGATG GCAATGTCCGATGAGGAGGATGAGGAAAATGTCGATGACCAATCTGGGAAGGATGGGGGCTGGGAGAAGATGATGAGTAAGAAAGATAAGCTCATGGATA AGCAGTTCGCAAAAGATCCTAGCGAAATCACTTGGGATATTGTGAACAAGAAGTTTAAAGAAATTGTTGCTGCCCGGGGTAGGAGGGGAACCGGAAGGTT TGAGCAGGTTGAACAGCTAACTTTCTTGACAAAGGTTGCTAAGACTCCTGCACAGAAGTTGGAGATTCTTTTCAGTGTGGTTTCTGCACAATTTGATGTG AATCCAGGTCTCAGTGGGCACATGCCTATCAATGTCTGGAAAAATTGTGTGCAGAACATGTTTATTATTCTTGACATTCTGGTACAATATCGTAATATTA TAGTGGATGACACAATTGAGCCTGATGAGAATGAAACCCAGAAAGTAGCAAACCATAATGGGCCAATTCGGATTTGGGGAAACTTAGTGGCTTTTCTTGA GAGGATGGATATCGAGTTCTTCAAGAGTTTGCAGTGCATCGATCCACATACACGTGAGTATGTTGAAAGACTGCAGGATGAACCCATGTTTTTAGTTCTT GCTCAGAATGTCCAAGAATATCTGGAGCATGCTGGAGATCTTAAAGCTGCAGCAAAGGTTGCCTTAAGACGTGTTGAGCTGATCTATTACAAACCACAAG AGGTTTATGATGCTATGAGAAAGTTGGCTGAACAGACAGAAGATGGAGGCGAGGGTGAGGAGCCTGAGGTTGAGGAAACTAGAGGTCCGTCTGCATTTGT TGTTACTACTGAGCTTGTGCCACGAAAGCCTATCTTTCCTGAGAATAGCAGGACAATGATGGATGCTTTAGTCTCCCTCATTTACAAGTCTGGAGATGAG CGGACCAAAGCTCGTGCAATGCTCTGTGATATCTATCACCATGCTCTCCTGGATGAGTTCTCAACCTCCCGTGACCTGCTATTGATGAGTCACTTGCAAG ATAATATTCAGCACATGGACATATCAAGCCAGATACTTTTCAACAGGGCTATGGCGCAACTTGGTTTATGTGCATTCCGGCTTGGTCTAATCATTGAAGC ACATGGATGTCTTTCTGAACTCTATTCTGGTGGAAGGGTGAAGGAGTTGCTTGCACAAGGTTTTTCACAAAGCCGATATCATGAAAAAACTCCTGAACAG GAAAGACTAGAAAGGAGACGCCAGATGCCATATCATATGCACATAAACCTTGAGCTTCTGGAGTCTGTCCATCTCATTTGTGCAATGCTGCTGGAGGTCC CCAACATGGCAGCTGATGCTCTTGATGTCAAGCGCAAAGTCATTAGCAAGAATTTTAGGCGGTTGCTTGAGGTAAGTGAGAGGCAAACTTTCACTGGGCC TCCTGAAAATGTTAGGGACCATGTGATGGCTGCTACACGGGCACTTAGCAAAGGAGATTTCCAGAAGGCCATCGATGTTATTGAGTCTCTTGATGTCTGG AAGCTCCTCAGAAATAGAGATGGTGTTCTTGAGATGCTTAAAGCGAAGATTAAGGAAGAAGCTCTGAGGACCTACCTGTTTTCCTACTCGTCCTCCTATG ATGCACTTGGCTTGGACCAGCTGACCAACATGTTTGACCTTTCAGTAGCCCAAACTCGAGTCATTGTCAGCAAAATGATGATTAATGACGAGCTCCATGC AAGCTGGGACCAGCCAACACAGTGTATTGTCTTCCATGATGTTCAGCACACAAGGTTGCAGGCTCTAGCATTCCAGTTGACAGAGAAGCTGTCCATCCTT GCTGAAAGTAATGAAAGGGCAACAGAGGCAAGAATTGGTGGTGGTGGTTTGGATCTGCCTCAGAGGCGGAGAGATGGCCAGGATTTTGCTAATGTGGCCG CTGCAGGTGGTAAGTGGCAAGAAAACTCATCTTTCACTCAGGGAAGGCAAGGTTCTGGCCGTTCTGGATATAGTGGTGGTGGTGGGAGGCCACAGGTGTT GGGCCAAGCTGCCGGGGTTGGCTATTCAAGGGGAGCAGGCAATTTGCGAGCAGGAGGTGGATATTCTGGAGGCGGACGGTATCAAGATGCTCCCACCCGC ATGGTTACTCTCAACAGGGGAGCCCGCGCTTGA
AA sequence Show only first row Show all	>Potri.002G016900.2 pacid=42779361 polypeptide=Potri.002G016900.2.p locus=Potri.002G016900 ID=Potri.002G016900.2.v4.1 annot-version=v4.1 MASRFWTQGDSESDEESDYGDEVEDGEAGESTAPATVDNKYLRGNASDSDESDDQKRVVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQL EKVMRVMESEKVPTLYIKALVMLEDFLNQALANKEAKKKMSSSNAKALNAMKQKLKKNNKQYEDQINKYREHPESEEEPEADEDSEEEEESDVEEDPSKM AMSDEEDEENVDDQSGKDGGWEKMMSKKDKLMDKQFAKDPSEITWDIVNKKFKEIVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDV NPGLSGHMPINVWKNCVQNMFIILDILVQYRNIIVDDTIEPDENETQKVANHNGPIRIWGNLVAFLERMDIEFFKSLQCIDPHTREYVERLQDEPMFLVL AQNVQEYLEHAGDLKAAAKVALRRVELIYYKPQEVYDAMRKLAEQTEDGGEGEEPEVEETRGPSAFVVTTELVPRKPIFPENSRTMMDALVSLIYKSGDE RTKARAMLCDIYHHALLDEFSTSRDLLLMSHLQDNIQHMDISSQILFNRAMAQLGLCAFRLGLIIEAHGCLSELYSGGRVKELLAQGFSQSRYHEKTPEQ ERLERRRQMPYHMHINLELLESVHLICAMLLEVPNMAADALDVKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALSKGDFQKAIDVIESLDVW KLLRNRDGVLEMLKAKIKEEALRTYLFSYSSSYDALGLDQLTNMFDLSVAQTRVIVSKMMINDELHASWDQPTQCIVFHDVQHTRLQALAFQLTEKLSIL AESNERATEARIGGGGLDLPQRRRDGQDFANVAAAGGKWQENSSFTQGRQGSGRSGYSGGGGRPQVLGQAAGVGYSRGAGNLRAGGGYSGGGRYQDAPTR MVTLNRGARA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Potri.002G016900 [exp]	0	1	Pt-TIF3.10
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G265300 [exp]	2.00	0.8112
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.007G004100 [exp]	2.44	0.8056	Pt-VALRS.2
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	3.00	0.8245	Pt-SYNC3.1
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Potri.005G245100 [exp]	7.74	0.7945	TIF3.9
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.003G081600 [exp]	8.71	0.8028
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.005G021400 [exp]	8.77	0.7603
AT5G07900			Mitochondrial transcription te...		Potri.001G034966 [exp]	9.48	0.7481
AT1G43690			ubiquitin interaction motif-co...		Potri.002G069100 [exp]	13.96	0.6687
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.006G267500 [exp]	14.49	0.7943	Pt-EIF3.6
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065600 [exp]	14.83	0.7625	Pt-LOS1.2

Compare expression of checked genes

Potri.002G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.