Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76040 757 / 0 CPK29 calcium-dependent protein kinase 29 (.1.2) AT1G50700 718 / 0 CPK33 calcium-dependent protein kinase 33 (.1) AT3G20410 714 / 0 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04720 693 / 0 CPK21 calcium-dependent protein kinase 21 (.1) AT4G21940 680 / 0 CPK15 calcium-dependent protein kinase 15 (.1.2) AT1G61950 647 / 0 CPK19 calcium-dependent protein kinase 19 (.1) AT5G12180 631 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 629 / 0 CPK34 calcium-dependent protein kinase 34 (.1) AT4G23650 620 / 0 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT4G04740 600 / 0 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245000 [exp] 828 / 0 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.011G003400 [exp] 706 / 0 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.004G015500 [exp] 705 / 0 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.001G097400 [exp] 634 / 0 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 629 / 0 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.009G069200 [exp] 624 / 0 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G274700 [exp] 622 / 0 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.004G207300 [exp] 573 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.006G200600 [exp] 571 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017251 [exp] 803 / 0 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10005619 [exp] 774 / 0 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10021531 [exp] 718 / 0 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 715 / 0 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10032640 [exp] 684 / 0 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10006777 [exp] 655 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10020046 [exp] 651 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10038460 [exp] 631 / 0 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10017537 [exp] 627 / 0 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10000889 [exp] 620 / 0 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.002G017000.1 pacid=42779918 polypeptide=Potri.002G017000.1.p locus=Potri.002G017000 ID=Potri.002G017000.1.v4.1 annot-version=v4.1 ATGGGACTTTGTTTCTCTAGACTCAGTTTCTCTAAGTTTTGTTCTCATGATATCCATATTTCCTCTACCTCGGATGAAGACAGCGACCAACCAAAACCAC CTAAAAGACCAGCCCAAGAACATTATAATCCATCACCACCACAACCACCACCAGTAGCCACAAAACCAGCTCCTTCTTCAAAAACATCTGGCAAATCTCA AACTACTCTTACTCCATCTTCAACATCAAATATTGGCTCTATTCTTGGCAAACCATACGTTGACATAACCAAGATTTACGATCTTGATAAAGAATTAGGT AGAGGTCAGTTCGGTATAACTTATCTTTGTACAGAGAAGGCAACACAAAGAAAGTATGCGTGCAAGTCTATTTCAAGGGGGAAACTGGTGACTAAAAAGG ATATTGAGGATGTTAAAATGGAGATTTTGATATTGGAGCACTTAACAGGGCAACCGAATATTGTTGAATTCAGGGGTGCTTATGAGGATAAACAGAATCT GTATTTGATCATGGAATTATGCTCTGGTGGGGAGCTTTTTGATCGGATTATCGCTAAAGGGAGTTACTCAGAGATGGAAGCTGCTACAATTATTAGGCAG ATTGTGAATGTGGTTCATGTGTGTCATTTTATGGGGGTTATGCATAGAGATTTGAAGCCCGAGAATTTCTTGCTTGCAAGTAAAGACGATAAAGCTCCGA TTAAAGCTACTGATTTTGGACTCTCTGTCTTCATTGAAGAGGGAAAAGTATACAGTGACATTGTTGGAAGTGCATACTATATTGCTCCAGAGGTGTTGAA ACGGAGTTATGGAAAAGAGATTGATGTATGGAGTGCTGGGATTATTTTGTACATTCTTCTGAGTGGAGTGCCTCCTTTCTGGGCTGAGACCGAGAAAGGC ATATTTGATGCGGTATTAGAAGGCAATCTTGACTTACAGAGCCCGCCATGGCCTAACATTTCATCCTCTGCAAAGGACCTTATAAGGAAAATGTTAACGA GGGACCCTAAGAGAAGGATTACCGCTGCCCAAGCACTTGAACATCCATGGATGAAGGTGGATGGTGACGCATCTGACAAACCTATAGATAGTGCTGTCCT GATTCGGATGAAGCAGTTTAGAGCAATGAACAAGTTAAAGAAACTTGCGTTAAAGGTAATAGCGGAGAACCTTTCAGAGGAAGAAATCAAGGGCTTAAAG CAGATGTTCAACAACATGGACACTGATGAAAGTGGTACTATCACATACGACGAACTCAAATCTGGACTGTCAAGGCTAGGATCTAAGCTTTCTGGAGTAG AGATAAAGCAGTTGATGGATGCTGCTGATGTTGATAAGAGTGGGACTATCGATTATCTCGAATTTATTACAGCTACCATGCATCGACATAGACTTGAGAT GGAAGAGAACTTGTACAAGGCCTTCCAATACTTTGACAAGGATGGCAGTGGGTTTATCTCAAGAGATGAACTAAGGCAAGCCATGGCTCAATATGGGATG GGTGATGATGCTACAATAAATGAAGTCATAGAAGATGTTGATACTGATAAAGATGGAAAGATCAACTATGAGGAGTTTGCGAGCATGATGAGAAAAGGAA CCCAAGATTACGAAATAAATTTAATATAG
AA sequence Show only first row Show all	>Potri.002G017000.1 pacid=42779918 polypeptide=Potri.002G017000.1.p locus=Potri.002G017000 ID=Potri.002G017000.1.v4.1 annot-version=v4.1 MGLCFSRLSFSKFCSHDIHISSTSDEDSDQPKPPKRPAQEHYNPSPPQPPPVATKPAPSSKTSGKSQTTLTPSSTSNIGSILGKPYVDITKIYDLDKELG RGQFGITYLCTEKATQRKYACKSISRGKLVTKKDIEDVKMEILILEHLTGQPNIVEFRGAYEDKQNLYLIMELCSGGELFDRIIAKGSYSEMEAATIIRQ IVNVVHVCHFMGVMHRDLKPENFLLASKDDKAPIKATDFGLSVFIEEGKVYSDIVGSAYYIAPEVLKRSYGKEIDVWSAGIILYILLSGVPPFWAETEKG IFDAVLEGNLDLQSPPWPNISSSAKDLIRKMLTRDPKRRITAAQALEHPWMKVDGDASDKPIDSAVLIRMKQFRAMNKLKKLALKVIAENLSEEEIKGLK QMFNNMDTDESGTITYDELKSGLSRLGSKLSGVEIKQLMDAADVDKSGTIDYLEFITATMHRHRLEMEENLYKAFQYFDKDGSGFISRDELRQAMAQYGM GDDATINEVIEDVDTDKDGKINYEEFASMMRKGTQDYEINLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.002G017000 [exp]	0	1
AT2G41200			unknown protein		Potri.006G038600 [exp]	1.00	0.9702
AT1G75260			oxidoreductases, acting on NAD...		Potri.002G034700 [exp]	2.44	0.9650
AT5G20870			O-Glycosyl hydrolases family 1...		Potri.006G216700 [exp]	2.82	0.9680
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.006G253900 [exp]	2.82	0.9613
AT5G03795			Exostosin family protein (.1)		Potri.014G171100 [exp]	4.89	0.9334
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245500 [exp]	4.89	0.9573
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.008G013400 [exp]	5.65	0.9426
					Potri.008G018000 [exp]	5.91	0.9606
AT5G40960			Protein of unknown function (D...		Potri.017G064400 [exp]	6.78	0.9350
AT5G42570			B-cell receptor-associated 31-...		Potri.011G089100 [exp]	7.93	0.9532

Compare expression of checked genes

Potri.002G017000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.