Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60420 303 / 1e-97 DC1 domain-containing protein (.1) AT4G31240 255 / 3e-81 protein kinase C-like zinc finger protein (.1.2) AT2G44380 42 / 0.0005 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244700 [exp] 739 / 0 AT1G60420 298 / 8e-96 DC1 domain-containing protein (.1) Potri.010G060200 [exp] 286 / 4e-91 AT1G60420 679 / 0.0 DC1 domain-containing protein (.1) Potri.010G059700 [exp] 283 / 4e-90 AT1G60420 680 / 0.0 DC1 domain-containing protein (.1) Potri.010G059900 [exp] 282 / 2e-89 AT1G60420 652 / 0.0 DC1 domain-containing protein (.1) Potri.010G059600 [exp] 279 / 3e-88 AT1G60420 666 / 0.0 DC1 domain-containing protein (.1) Potri.010G059401 [exp] 276 / 5e-87 AT1G60420 667 / 0.0 DC1 domain-containing protein (.1) Potri.010G059550 [exp] 275 / 8e-87 AT1G60420 658 / 0.0 DC1 domain-containing protein (.1) Potri.010G060300 [exp] 270 / 9e-86 AT1G60420 560 / 0.0 DC1 domain-containing protein (.1) Potri.006G279400 [exp] 262 / 7e-84 AT4G31240 542 / 0.0 protein kinase C-like zinc finger protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017252 [exp] 558 / 0 AT1G60420 311 / 1e-100 DC1 domain-containing protein (.1) Lus10005618 [exp] 537 / 0 AT1G60420 300 / 2e-96 DC1 domain-containing protein (.1) Lus10013017 [exp] 288 / 1e-91 AT1G60420 624 / 0.0 DC1 domain-containing protein (.1) Lus10029148 [exp] 62 / 2e-11 AT1G60420 121 / 5e-33 DC1 domain-containing protein (.1) Lus10032103 [exp] 45 / 7e-05 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014580 [exp] 45 / 0.0001 AT3G01680 758 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000548 [exp] 44 / 0.0003 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022305 [exp] 44 / 0.0003 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13905 [poplar] [flax] Thioredoxin_8 Thioredoxin-like
Representative CDS sequence Show only first row Show all	>Potri.002G017200.2 pacid=42779231 polypeptide=Potri.002G017200.2.p locus=Potri.002G017200 ID=Potri.002G017200.2.v4.1 annot-version=v4.1 ATGAAGCCGATGAGCTTGGAGGAGAATACAGGGAAACTTCAAGCTAGTGAAGATGAAGTAAACGGTGATCACTCCCAGAAAATCTCAAGCTCTAGATTTT CATCACTTTTGGCCACCAAAGATCGTGATTATCTTCTCTCTCAAGATGGGACTCAGGTGAAAGTTTCTGATCTTGAAGGCAAAGTTCTGGGCCTCTACTT CTCTGCAAACTGGTACGTCCCATGTCGAAGCTTCACTACCCAAGTCTTAGTTGGTGCATATGAGCATTTGAAGAGCAAAGGGTCTAATTTTGAAATTGTC TTTATTTCATCCGACGAGGACTTGGATGCCTTCAACAATTATCGTGCCAACATGCCATGGCTTTCCATTCCATTTTCGGATTTGGAGACCAAAAGAGCCT TAAATAGTAAATTTGAAATCGAAGCAATTCCTTTTCTAGTCATCTTGCAACCTGAGGATAACAAATATGAGGCAACAATACATGATGGCGTCGAGCTTCT TAACCGTTTTGGGGTCCAAGCTTTCCCATTTACCAAAGAGAGGTTGGAGGAATTGGAAATGGAAGAGAAGGAGAAGCGTGAGAGCCAGACCCTAATTAAT TTACTGACGAACCACGATAGAGACTATCTTTTGGGTCACCCCGCAGCTAAACAGGTGCCTGTTGCCTCGTTGGTAGGCAAAACACTCGGACTATATTTTT CAGCTCAATGGTGTCTTCCAGGAGTGAAGTTCACTCCCAAGCTAATATCCATCTACCAAAAGATTAAGCAAATGGTGGTACATAAAGGCAATGAAGATGA CTTTGAGATTGTGTTTGTGTCAAGTGATCGCGATCAAGCCGCGTTCGACTCCTACTTCAATAGCATGCCATGGCTAACATTGCCTTTCGGAGATCCTGCC AACAAAATCCTTGCTAAGCACTTTGATGTGAAAGGTATTCCTTGCTTGGTAATTTTGGGCCCAGATGGTAAAACTGTTACTAAACATGGTAGAAACCTAA TCAACTTGTACAAAGAAAATGCGTACCCTTTCACTGAGGCCCAAGTGGATTTACTAGAGAAACAAATAGATGAGGAGGCTAAAAGCCTGCCAAAATCGAA GTACCATGCAGGGCATCGACATGAACTCGGTTTGGTTTCAGAAGGAACTGGAGGAGGACCGTTTATATGCTGTGATTGTGATGAACAAGGTTCAGGATGG GCTTACCTGTGCCTTGAATGCGGATATGAGGTGCACACCAAGTGTGTCAGAGCTGTGGACCGTGGCTCCATGGTTGACAGCTGA
AA sequence Show only first row Show all	>Potri.002G017200.2 pacid=42779231 polypeptide=Potri.002G017200.2.p locus=Potri.002G017200 ID=Potri.002G017200.2.v4.1 annot-version=v4.1 MKPMSLEENTGKLQASEDEVNGDHSQKISSSRFSSLLATKDRDYLLSQDGTQVKVSDLEGKVLGLYFSANWYVPCRSFTTQVLVGAYEHLKSKGSNFEIV FISSDEDLDAFNNYRANMPWLSIPFSDLETKRALNSKFEIEAIPFLVILQPEDNKYEATIHDGVELLNRFGVQAFPFTKERLEELEMEEKEKRESQTLIN LLTNHDRDYLLGHPAAKQVPVASLVGKTLGLYFSAQWCLPGVKFTPKLISIYQKIKQMVVHKGNEDDFEIVFVSSDRDQAAFDSYFNSMPWLTLPFGDPA NKILAKHFDVKGIPCLVILGPDGKTVTKHGRNLINLYKENAYPFTEAQVDLLEKQIDEEAKSLPKSKYHAGHRHELGLVSEGTGGGPFICCDCDEQGSGW AYLCLECGYEVHTKCVRAVDRGSMVDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60420			DC1 domain-containing protein ...		Potri.002G017200 [exp]	0	1
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.014G103000 [exp]	1.00	0.9306	Pt-ATHB.5
AT4G17790			SNARE associated Golgi protein...		Potri.001G140200 [exp]	1.41	0.9082
AT5G24080			Protein kinase superfamily pro...		Potri.015G026300 [exp]	2.44	0.9080
AT3G27250			unknown protein		Potri.001G334500 [exp]	2.44	0.8870
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.014G028200 [exp]	3.16	0.8964	Pt-ABF2.1
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.009G037300 [exp]	3.46	0.8982
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.002G125400 [exp]	4.00	0.8761	ABF2.2
AT1G60420			DC1 domain-containing protein ...		Potri.005G244700 [exp]	6.00	0.8681
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.008G059200 [exp]	7.61	0.8222
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.012G002700 [exp]	10.95	0.8518

Compare expression of checked genes

Potri.002G017200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.