Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42200 155 / 9e-49 RING/U-box superfamily protein (.1) AT5G05280 74 / 1e-16 RING/U-box superfamily protein (.1) AT4G10160 74 / 2e-16 RING/U-box superfamily protein (.1) AT3G18773 74 / 2e-16 RING/U-box superfamily protein (.1) AT2G42350 72 / 7e-16 RING/U-box superfamily protein (.1) AT1G49210 72 / 7e-16 RING/U-box superfamily protein (.1) AT4G40070 73 / 1e-15 RING/U-box superfamily protein (.1) AT5G01880 70 / 1e-15 RING/U-box superfamily protein (.1) AT4G10150 72 / 2e-15 RING/U-box superfamily protein (.1) AT5G66070 71 / 3e-15 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244500 [exp] 240 / 4e-82 AT5G42200 149 / 3e-46 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 82 / 1e-19 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 75 / 4e-17 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 74 / 6e-17 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.001G162000 [exp] 74 / 2e-16 AT1G53820 149 / 2e-43 RING/U-box superfamily protein (.1) Potri.003G073300 [exp] 74 / 5e-16 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 74 / 7e-16 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 74 / 9e-16 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.002G006400 [exp] 71 / 1e-15 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017253 [exp] 162 / 8e-52 AT5G42200 126 / 4e-38 RING/U-box superfamily protein (.1) Lus10034551 [exp] 144 / 4e-45 AT5G42200 112 / 2e-32 RING/U-box superfamily protein (.1) Lus10005617 [exp] 143 / 1e-44 AT5G42200 108 / 6e-31 RING/U-box superfamily protein (.1) Lus10021842 [exp] 137 / 4e-42 AT5G42200 103 / 3e-29 RING/U-box superfamily protein (.1) Lus10015506 [exp] 73 / 5e-17 AT2G18670 102 / 2e-28 RING/U-box superfamily protein (.1) Lus10019979 [exp] 73 / 2e-16 AT2G18670 113 / 5e-32 RING/U-box superfamily protein (.1) Lus10004460 [exp] 74 / 5e-16 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10015901 [exp] 73 / 1e-15 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10009511 [exp] 73 / 2e-15 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10001654 [exp] 72 / 2e-15 AT1G74410 251 / 1e-84 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G017400.1 pacid=42778519 polypeptide=Potri.002G017400.1.p locus=Potri.002G017400 ID=Potri.002G017400.1.v4.1 annot-version=v4.1 ATGGTCACACTCACACCACCTCCTATTCACTGTCCCACTCCATCACCACCCCCCTTGAGCTTTAACAGCGACGCTTCCTTCACCACCGGCCAGAACATGC TTGTCTCTGTGCTTTTCGCACTTTTTCTGCCATGTGTAGGTATGAGCGTAGTGTTTTTTATCTATATTTGTCTCCTATGGTATGCTGCTAATAATCAACC AGAGAACATTCCTTTACCGGTAAAAACTGTGACAGAGAAGGGTTTGTCATCATCGGAGCTCGAGAAGTTGCCTAAGGTCACCGGGAAAGAGCTTGTTTTG GGGACAGAGTGTGCTGTTTGTCTAGATGACATTGAAAGTGAACAGCTGGCTAGGATAGTTCCTGGCTGCAATCATGGGTTTCATCTGGAATGTGCTGATA CTTGGCTTTCCAAGCACCCTGTTTGTCCTGTTTGTCGGGCAAAGCTTGATGCTCAGTTCTCCAGTACTTCTGCTTCTCCAGAGAACAATCCTTGTTGA
AA sequence Show only first row Show all	>Potri.002G017400.1 pacid=42778519 polypeptide=Potri.002G017400.1.p locus=Potri.002G017400 ID=Potri.002G017400.1.v4.1 annot-version=v4.1 MVTLTPPPIHCPTPSPPPLSFNSDASFTTGQNMLVSVLFALFLPCVGMSVVFFIYICLLWYAANNQPENIPLPVKTVTEKGLSSSELEKLPKVTGKELVL GTECAVCLDDIESEQLARIVPGCNHGFHLECADTWLSKHPVCPVCRAKLDAQFSSTSASPENNPC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42200			RING/U-box superfamily protein...		Potri.002G017400 [exp]	0	1
AT1G07370		ATPCNA1, PCNA1	proliferating cellular nuclear...		Potri.010G193950 [exp]	4.00	0.9484
AT4G01440			nodulin MtN21 /EamA-like trans...		Potri.002G182700 [exp]	7.68	0.8967
AT5G42146			unknown protein		Potri.009G129301 [exp]	10.95	0.8504
AT1G79480			Carbohydrate-binding X8 domain...		Potri.010G173500 [exp]	11.40	0.9409
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027800 [exp]	12.44	0.8223
					Potri.016G114100 [exp]	12.80	0.8183
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.003G053900 [exp]	13.26	0.8131
AT1G79480			Carbohydrate-binding X8 domain...		Potri.006G008200 [exp]	16.49	0.9396
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.001G189900 [exp]	17.02	0.9394
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Potri.003G114400 [exp]	18.00	0.9265

Compare expression of checked genes

Potri.002G017400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.