Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20225 252 / 5e-85 Thioredoxin superfamily protein (.1) AT1G76020 225 / 2e-74 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244400 [exp] 344 / 2e-121 AT1G20225 259 / 1e-87 Thioredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005616 [exp] 279 / 9e-96 AT1G20225 251 / 9e-85 Thioredoxin superfamily protein (.1) Lus10017254 [exp] 277 / 5e-95 AT1G20225 246 / 1e-82 Thioredoxin superfamily protein (.1) Lus10021843 [exp] 253 / 1e-85 AT1G20225 238 / 1e-79 Thioredoxin superfamily protein (.1) Lus10034550 [exp] 58 / 4e-11 AT1G76020 57 / 3e-11 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13462 [poplar] [flax] Thioredoxin_4 Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.002G017500.2 pacid=42779205 polypeptide=Potri.002G017500.2.p locus=Potri.002G017500 ID=Potri.002G017500.2.v4.1 annot-version=v4.1 ATGAAGAGACAGCATCACTTTGCCGTAATTCAGTTCTCTTACATATTTCTTTTCATCACCTCGTCTCAATGGAACGTCCTACCCCAGAATTTGCCACCTC TGAGGTACGATGGGTTCGTATACGAGAATCGCAAAGGTGGCTCGGACTCCATCCTGATCGAAGCTTTCTTTGACCCTGTCTGCCCGGATTCCAGGGACAC CTGGCCACCTCTCCAAAAAGCTCTTAAACACTACGGTTCCCGTGTTTCGCTCGTCGTTCACCTCCTCCCTTTACCCTACCACGACAACGCATTTGTAGCT TCCCGCGCTTTGCATATTGCTAACATACTCAACTGTTCGTTTACATTCCCTTTGTTGGAGCAGTTCTTCAAGCATCAGGAGAAGTTCTATGGTTCCGAAA CAAGCAATTTGTCAAAAGATTCCATCGTGAAGGAAATCGTGAAGTTTGCGACTGTAATTGTTGGGGATTCCTATTCTTCTCCATTGCAATTTGGTTTTAA TGATATACAAACTGATCTGAAAACAAGGGTTTCCTTCAAGTATAGTGCTTCAAGAGGGGTATATGCCACTCCCTTTTTCTTCGTCAATGGATTTGGGTTG CCTGGTGCCGGTTCTGCTTTGGACTATAAAGTTTGGAGAAGCATTATCGATCCGTTGGTTGGTGCAAAGTAG
AA sequence Show only first row Show all	>Potri.002G017500.2 pacid=42779205 polypeptide=Potri.002G017500.2.p locus=Potri.002G017500 ID=Potri.002G017500.2.v4.1 annot-version=v4.1 MKRQHHFAVIQFSYIFLFITSSQWNVLPQNLPPLRYDGFVYENRKGGSDSILIEAFFDPVCPDSRDTWPPLQKALKHYGSRVSLVVHLLPLPYHDNAFVA SRALHIANILNCSFTFPLLEQFFKHQEKFYGSETSNLSKDSIVKEIVKFATVIVGDSYSSPLQFGFNDIQTDLKTRVSFKYSASRGVYATPFFFVNGFGL PGAGSALDYKVWRSIIDPLVGAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	0	1
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G086000 [exp]	1.41	0.9318
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	2.44	0.9081
					Potri.007G089400 [exp]	5.29	0.8904
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219700 [exp]	5.47	0.8939
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	5.47	0.8866
					Potri.018G014550 [exp]	6.92	0.8174
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	9.48	0.8765
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G024200 [exp]	13.41	0.8202
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	14.49	0.8427
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Potri.002G240700 [exp]	18.97	0.8088

Compare expression of checked genes

Potri.002G017500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.