Plant FIBer expression Database

Potri.002G017600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76010 216 / 2e-68 Alba DNA/RNA-binding protein (.1)
AT1G20220 187 / 1e-57 Alba DNA/RNA-binding protein (.1)
AT3G07030 134 / 2e-36 Alba DNA/RNA-binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G244300
[exp]
254 / 8e-85 AT1G76010 221 / 7e-71 Alba DNA/RNA-binding protein (.1)
Potri.002G066100
[exp]
184 / 9e-57 AT1G20220 200 / 1e-62 Alba DNA/RNA-binding protein (.1)
Potri.005G194600
[exp]
180 / 9e-56 AT1G20220 194 / 6e-61 Alba DNA/RNA-binding protein (.1)
Potri.002G240601
[exp]
124 / 2e-33 AT3G07030 199 / 3e-61 Alba DNA/RNA-binding protein (.1)
Potri.005G189000
[exp]
39 / 0.0003 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005615
[exp]
257 / 1e-85 AT1G76010 264 / 3e-87 Alba DNA/RNA-binding protein (.1)
Lus10017255
[exp]
253 / 6e-84 AT1G76010 251 / 2e-82 Alba DNA/RNA-binding protein (.1)
Lus10021844
[exp]
239 / 2e-77 AT1G76010 280 / 1e-92 Alba DNA/RNA-binding protein (.1)
Lus10034549
[exp]
238 / 3e-77 AT1G76010 276 / 5e-91 Alba DNA/RNA-binding protein (.1)
Lus10022807
[exp]
129 / 9e-35 AT3G07030 241 / 4e-76 Alba DNA/RNA-binding protein (.1)
Lus10011874
[exp]
129 / 7e-34 AT3G07030 239 / 2e-73 Alba DNA/RNA-binding protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0441 AlbA PF01918 Alba Alba
Representative CDS sequence
>Potri.002G017600.12 pacid=42779510 polypeptide=Potri.002G017600.12.p locus=Potri.002G017600 ID=Potri.002G017600.12.v4.1 annot-version=v4.1
ATGGACCGGTACCAGAGAGTGGAGAAGCCGAGAGCGGATAAAACAATTGATGAGAACGAGATTCGAATTACTAGTCAAGGAAGGATGCGTAGCTATATCT
CTTATGCCATGACTCTGCTTCAAGAAAAAGGTTCGAATGAAATTGTATTCAAGGCTATGGGGAGAGCCATCAACAAGACAGTGACTATAGTGGAGTTAAT
CAAGAGAAGAATTGTTGGTCTCCATCAAATCACATCAATTGGATCCACGGACATAACAGATACTTGGGAACCGCTTGAGGAAGGCCTCCTTCCATTGGAA
ACCACAAGGCATGTTTCAATGATTACAATCAACCTTTCCAAGAAGGAGCTGAATACATCTTCTGCTGGGTACCAGCCTCCGTTACCTGCTGAGCAGGTGA
AGGCATTCACAGAGTTCGAGTATGAGGGAGATGGCTCACCACGTGGCCGTGGCAGGGGACGAGGAGGCAGAGGAAGGGCAAGGGGTAGAGGGAATGGGTT
TGTGTCCGCTGAGCATGAGGATGGGGGTTGGGATCGCAATCGGGGATATCCTAGGGGCAGGGGTCGAGGCAGAGGACGTGGTTTCCGTGGCCGTGGAAGG
GGAGGATTTAACGGACCTCATGCTGATACCCAGCAAGATGGCGGTCATAATTATGAAGGACCTCCACAAGGCCGCGGTGGTTATAATTATGAAGCTCCTC
CACAAGGCCGTGGTGGTTATAATTATGAAGCTCCTCCACAAGGCCGCGATGGTTATAATTATGAAGCACCTCCACATGGCCGCGGCCGTGGCCGTGGGAG
GGGAAATCGCGGAAGAGGCCGTGGATTTAGATCTAATGGCCCGATCCCTGCAGCTGCATAA
AA sequence
>Potri.002G017600.12 pacid=42779510 polypeptide=Potri.002G017600.12.p locus=Potri.002G017600 ID=Potri.002G017600.12.v4.1 annot-version=v4.1
MDRYQRVEKPRADKTIDENEIRITSQGRMRSYISYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQITSIGSTDITDTWEPLEEGLLPLE
TTRHVSMITINLSKKELNTSSAGYQPPLPAEQVKAFTEFEYEGDGSPRGRGRGRGGRGRARGRGNGFVSAEHEDGGWDRNRGYPRGRGRGRGRGFRGRGR
GGFNGPHADTQQDGGHNYEGPPQGRGGYNYEAPPQGRGGYNYEAPPQGRDGYNYEAPPHGRGRGRGRGNRGRGRGFRSNGPIPAAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76010 Alba DNA/RNA-binding protein (... Potri.002G017600
[exp]
0 1
AT3G03920 H/ACA ribonucleoprotein comple... Potri.019G034900
[exp]
3.31 0.8163
AT5G64200 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG ... Potri.002G095800
[exp]
4.47 0.7349
AT5G67240 SDN3 small RNA degrading nuclease 3... Potri.007G048000
[exp]
4.69 0.7976
AT2G37500 arginine biosynthesis protein ... Potri.012G115900
[exp]
5.74 0.7339
AT2G36930 C2H2ZnF zinc finger (C2H2 type) family... Potri.016G093500
[exp]
15.65 0.6897
AT3G17465 RPL3P ribosomal protein L3 plastid (... Potri.008G207000
[exp]
15.77 0.7819 RPL3.2
AT3G19360 C3HZnF Zinc finger (CCCH-type) family... Potri.004G169500
[exp]
23.91 0.7284
AT3G19508 unknown protein Potri.009G094200
[exp]
25.09 0.7271
AT1G25260 Ribosomal protein L10 family p... Potri.011G156300
[exp]
25.76 0.7745
AT2G46230 PIN domain-like family protein... Potri.014G092600
[exp]
28.24 0.6987

Potri.002G017600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.