Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATEXPA11.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20190 408 / 9e-146 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1) AT4G01630 336 / 2e-117 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT1G69530 334 / 2e-116 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT5G05290 325 / 6e-113 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G40610 323 / 2e-112 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT2G03090 320 / 6e-111 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT2G39700 312 / 6e-108 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G37640 310 / 6e-107 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G56320 308 / 4e-106 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT3G55500 306 / 2e-105 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244100 [exp] 500 / 0 AT1G20190 404 / 3e-144 EXPANSIN 11, expansin 11 (.1) Potri.002G184700 [exp] 341 / 3e-119 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1) Potri.019G057500 [exp] 339 / 1e-118 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.006G108000 [exp] 338 / 3e-118 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 338 / 4e-118 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.001G001100 [exp] 325 / 2e-113 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.010G167200 [exp] 321 / 3e-111 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 320 / 5e-111 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.013G154700 [exp] 315 / 3e-109 AT2G40610 348 / 2e-122 expansin A8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034548 [exp] 430 / 2e-154 AT1G20190 400 / 1e-142 EXPANSIN 11, expansin 11 (.1) Lus10021845 [exp] 429 / 5e-154 AT1G20190 397 / 1e-141 EXPANSIN 11, expansin 11 (.1) Lus10017256 [exp] 417 / 2e-149 AT1G20190 378 / 5e-134 EXPANSIN 11, expansin 11 (.1) Lus10034227 [exp] 325 / 6e-113 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10008603 [exp] 320 / 4e-111 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10026614 [exp] 318 / 4e-110 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10042214 [exp] 318 / 5e-110 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10036763 [exp] 317 / 9e-110 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10009253 [exp] 317 / 1e-109 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10037164 [exp] 315 / 4e-109 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.002G017900.1 pacid=42779123 polypeptide=Potri.002G017900.1.p locus=Potri.002G017900 ID=Potri.002G017900.1.v4.1 annot-version=v4.1 ATGGGAAAACTTCTTCTTGCATTTGCAATCTGGCTGCAATTCTGCAACTATTTTGCTATCAATGTTAATGCATTTGCCCCATCAGGATGGACGAAAGGTC ATGCTACATTTTATGGAGGCAGTGATGCCTCAGGAACTATGGGAGGGGCTTGTGGATATGGAAACTTGTATTCTACTGGTTATGGGACTAGGACTGCTGC TTTAAGCACTGCTTTATTCAATGATGGAGCTTCATGTGGAGAATGCTACAGAATTATGTGTGATTTTCAAACGGATTCCAGATGGTGTATTAAAGGGAGG TCTGTGACTATTACTGCAACAAATTTCTGCCCCCCGAATTTTGCTCTTCCAAACAACAATGGAGGCTGGTGCAACCCTCCCCTCCAGCATTTCGATATGG CCCAGCCTGCTTGGGAAAAGATTGGTATTTATAGGGGAGGGATCGTGCCTGTTTTGTTCCAAAAGGTTCCTTGCAAGAAGCATGGTGGAGTCAGATTCAC TATTAATGGAAGAAACTACTTTGAGCTCGTCTTGATTACCAATGTAGCTGGAGCTGGATCCATTCAATCTGTGTCCATTAAAGGCTCAAAAACAGGCTGG CTGGCAATGTCAAGAAACTGGGGGGTTAATTGGCAATCTAATGCTTATCTCAATGGCCAATCTTTGTCCTTTAAGGTCACAACTACTGATGGACAGACTC GATTCTTTACAGACATTGTTCCAGCAAATTGGGGGTTTGGCCAGACTTTCCAAAGCTCAGTACAGTTCTAA
AA sequence Show only first row Show all	>Potri.002G017900.1 pacid=42779123 polypeptide=Potri.002G017900.1.p locus=Potri.002G017900 ID=Potri.002G017900.1.v4.1 annot-version=v4.1 MGKLLLAFAIWLQFCNYFAINVNAFAPSGWTKGHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYRIMCDFQTDSRWCIKGR SVTITATNFCPPNFALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQKVPCKKHGGVRFTINGRNYFELVLITNVAGAGSIQSVSIKGSKTGW LAMSRNWGVNWQSNAYLNGQSLSFKVTTTDGQTRFFTDIVPANWGFGQTFQSSVQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Potri.002G017900 [exp]	0	1	ATEXPA11.2
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085600 [exp]	5.56	0.9361
					Potri.001G388200 [exp]	8.48	0.8879
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126200 [exp]	10.24	0.8945
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	10.86	0.9098
AT5G05340			Peroxidase superfamily protein...		Potri.013G156800 [exp]	11.40	0.8956	RIP1.3
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G276500 [exp]	11.48	0.9052
AT3G10710		RHS12	root hair specific 12 (.1)		Potri.008G011200 [exp]	12.48	0.8780
					Potri.002G012433 [exp]	12.64	0.9028
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.001G105400 [exp]	18.00	0.8778
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126300 [exp]	19.77	0.8835

Compare expression of checked genes

Potri.002G017900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.