Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20180 288 / 3e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G49070 103 / 4e-24 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G243800 [exp] 633 / 0 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G067300 [exp] 183 / 4e-54 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G193000 [exp] 178 / 3e-52 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.015G147400 [exp] 110 / 5e-27 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.010G240200 [exp] 76 / 8e-15 AT3G19330 311 / 9e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005612 [exp] 307 / 5e-102 AT1G20180 268 / 1e-86 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017286 [exp] 297 / 6e-98 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10010144 [exp] 289 / 4e-94 AT1G20180 260 / 4e-83 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017348 [exp] 280 / 2e-90 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10031977 [exp] 92 / 2e-20 AT3G19330 284 / 2e-93 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10039258 [exp] 76 / 1e-15 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10035125 [exp] 69 / 2e-13 AT3G19330 183 / 1e-56 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10028573 [exp] 54 / 4e-08 AT3G49070 102 / 4e-25 Protein of unknown function (DUF677) (.1) Lus10027501 [exp] 53 / 1e-07 AT3G49070 98 / 2e-23 Protein of unknown function (DUF677) (.1) Lus10018879 [exp] 42 / 6e-05 AT3G49070 56 / 2e-10 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05055 [poplar] [flax] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Potri.002G018200.1 pacid=42777717 polypeptide=Potri.002G018200.1.p locus=Potri.002G018200 ID=Potri.002G018200.1.v4.1 annot-version=v4.1 ATGACAAATCTTTTGTGGGCTAAGATAAGATCTATCTTTTCAAGGGCAGGAAGATCTCCAAAGGAACGTGGCAACAGCTTAAGCAACAAGCTGAACGTTA ATGAAGAGTACAAGGAAGCTTTCAGGACGAAGTCTTATGTAGAAATGTGGAGCAAGGTTCAAGACCAGCTAAGAAAAACGAGCATTGATGGAGTTGACAA AGTCGCCTCACCGTCTGATCCATCTCTTCCTTTATATCATCACCTCTCTGACTATCTATTTGAACCACAACAGCAAGAGACACTCAGAGAGATGATGGGA AGCTTAAAGTTTCATCACCTTCTGGTTGATTACTTTGAAGCCAGCTCAAAAGCATGCCATATTTGTGAGTTGCATCTCCAGTGCATCCAACAAACACGAG GTAATTATAAGAAAATTAGAAGGGTAATCAAGTTAAGCAAAAGGGTGCATGATTCTGCAGACTGTTCAGATAAGATTCAGGGCGCTATGTTTAGAGAGCT GGCTGCTTATGCATTGTTAGAAAATCCGTTATCGATGTTTTTTAGCACTGAAAAATTCCTTGATTTTCATGACGACAACGTGGTGTTGCTCCATGGATTG ACTTCACAAAAGAAAAGGATTATGAGGAAAACGAAGTTCAGAAGGATTTGTATTAGGGTTGGAGGAGGATGTCTTGTGATATCACATACTGCACTTCTAA TTGCCTTGCTTGTAATTGCAATTCATAGCATGGCTGGCATTGTGGCTGCACCAGGACTAATGGGTTGCTCGTTGTATGCATTCAGAAAGCAAATCAAGTT GGTTCATCGAGGGCTTGAGAAAAGCAGGTTTGAAAAAAGACTTGGCGCACAGCTAGATCTTGCTGCCAAAGGAATTTACATATTGATCAATGATTTCAAT ACCGTGAGCAGGCTGACGAGGAGCTTATTTGATGAGGTCGAACATCAGAAAGCTCTTGCTGATATGTGTGTTAGGAATAACAAGCCTGAACTATTGAAAG AGGTCGTGAAAGAATTTCACATTCACGACTCAAGCTACCTGGAGCAGCTAGAAGAGCTTGAGCGACATATCTACTTGTGTTTTCATACCATAAATAGATC CAGAAGGCTTGTTATGGACAAGATAATGGTTGCATCCAACAACAGTACAGCTGATGATCATCAGCAAAAATTCCCATGA
AA sequence Show only first row Show all	>Potri.002G018200.1 pacid=42777717 polypeptide=Potri.002G018200.1.p locus=Potri.002G018200 ID=Potri.002G018200.1.v4.1 annot-version=v4.1 MTNLLWAKIRSIFSRAGRSPKERGNSLSNKLNVNEEYKEAFRTKSYVEMWSKVQDQLRKTSIDGVDKVASPSDPSLPLYHHLSDYLFEPQQQETLREMMG SLKFHHLLVDYFEASSKACHICELHLQCIQQTRGNYKKIRRVIKLSKRVHDSADCSDKIQGAMFRELAAYALLENPLSMFFSTEKFLDFHDDNVVLLHGL TSQKKRIMRKTKFRRICIRVGGGCLVISHTALLIALLVIAIHSMAGIVAAPGLMGCSLYAFRKQIKLVHRGLEKSRFEKRLGAQLDLAAKGIYILINDFN TVSRLTRSLFDEVEHQKALADMCVRNNKPELLKEVVKEFHIHDSSYLEQLEELERHIYLCFHTINRSRRLVMDKIMVASNNSTADDHQQKFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20180			Protein of unknown function (D...		Potri.002G018200 [exp]	0	1
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.004G121100 [exp]	10.09	0.8836
AT3G06840			unknown protein		Potri.010G010600 [exp]	15.55	0.8775
AT4G22190			unknown protein		Potri.006G283300 [exp]	16.61	0.8689
AT1G20070			unknown protein		Potri.005G241800 [exp]	24.41	0.8630
AT2G37980			O-fucosyltransferase family pr...		Potri.006G095300 [exp]	34.98	0.8538
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.001G269800 [exp]	36.08	0.8490
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Potri.002G125300 [exp]	36.74	0.8527
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.002G224600 [exp]	41.92	0.8602
AT3G04830			Protein prenylyltransferase su...		Potri.013G038501 [exp]	43.47	0.8489
AT1G78922			unknown protein		Potri.007G001650 [exp]	46.90	0.8545

Compare expression of checked genes

Potri.002G018200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.