Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35900 133 / 4e-38 bZIP ATBZIP14, FD-1, FD Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G17770 119 / 6e-34 bZIP FDP, ATBZIP27 FD PARALOG, basic region/leucine zipper motif 27 (.1.2) AT3G56850 88 / 1e-20 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 76 / 1e-16 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G45249 72 / 8e-15 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT4G34000 69 / 2e-13 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G19290 68 / 3e-13 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT1G49720 67 / 4e-13 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT2G36270 64 / 5e-12 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 57 / 9e-10 bZIP GBF4 G-box binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G243400 [exp] 178 / 1e-55 AT4G35900 117 / 4e-31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G109500 [exp] 138 / 3e-40 AT4G35900 179 / 5e-55 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.008G010800 [exp] 82 / 2e-18 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 81 / 4e-18 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 81 / 6e-18 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.002G125400 [exp] 77 / 2e-16 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.009G101200 [exp] 73 / 4e-15 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.014G028200 [exp] 71 / 3e-14 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.009G164500 [exp] 68 / 2e-13 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008927 [exp] 85 / 5e-21 AT3G56850 139 / 1e-41 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 86 / 7e-20 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10017283 [exp] 71 / 2e-15 AT4G35900 76 / 1e-16 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10009755 [exp] 74 / 4e-15 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10006489 [exp] 72 / 7e-15 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10017284 [exp] 67 / 4e-14 AT4G35900 62 / 7e-12 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014066 [exp] 69 / 1e-13 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10002399 [exp] 68 / 3e-13 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10027897 [exp] 64 / 9e-12 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10017049 [exp] 61 / 7e-11 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G018400.2 pacid=42778853 polypeptide=Potri.002G018400.2.p locus=Potri.002G018400 ID=Potri.002G018400.2.v4.1 annot-version=v4.1 ATGAGCACCAATAAAGTCTCTAGTAATTCTCCGTCAAAATCCCTCTATACATGTTCATCTCCTTCAACTCTGTCGTCTCCTTCTCCAATACCAAACCAAT CAACGACTGGAAACTCAATGGAAGAAGTTTGGAATGATATAAACCTAGCTTCTCTTCATGAACATCCAAATAGTCACACAGGCAGCAACAACAACACCGA CGACCATGTTTTTCATGGTATGATGTTTCAAGACCTCTTGGCTAGATCTTCCAATAAAGACACACCAACAAGGGTTGCCTCTAAGGAACCCTCATCTGGT GGGGGCAACAATTTCTTGAAGAACTCTTTAGGGCCGCCACCAGCTACTATGCTGAATTTGAATTATGGAAAAAGGCCTCAAGAAAACGATGACGTTTCTG GCGGCGATCGGAGGCATGAGCGCATGATCAAGAACAGAGAATCTGCAGCTCGGTCCCGGGCTAGGAAGCAGGCTTACACGACCGAGTTGGAACTTAAAGT TGCTCTGTTAGGAGAGGAGAATGCCAAGCTTAGAAAGCAGCAAGAAAGGTTCTTGGCAGCAGCTCCTGCTCAGCCACCAAAAAAGCACACCCTCTATCGA ACCTCAACGGCTCCATTTTGA
AA sequence Show only first row Show all	>Potri.002G018400.2 pacid=42778853 polypeptide=Potri.002G018400.2.p locus=Potri.002G018400 ID=Potri.002G018400.2.v4.1 annot-version=v4.1 MSTNKVSSNSPSKSLYTCSSPSTLSSPSPIPNQSTTGNSMEEVWNDINLASLHEHPNSHTGSNNNTDDHVFHGMMFQDLLARSSNKDTPTRVASKEPSSG GGNNFLKNSLGPPPATMLNLNYGKRPQENDDVSGGDRRHERMIKNRESAARSRARKQAYTTELELKVALLGEENAKLRKQQERFLAAAPAQPPKKHTLYR TSTAPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.002G018400 [exp]	0	1
AT4G09020		ATISA3, ISA3	isoamylase 3 (.1)		Potri.002G100900 [exp]	5.47	0.7789
AT5G13660			unknown protein		Potri.008G051300 [exp]	7.48	0.7838
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.003G194600 [exp]	14.69	0.7778
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.010G186200 [exp]	15.65	0.8014
AT1G34770			unknown protein		Potri.005G164300 [exp]	24.79	0.7609
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.010G110700 [exp]	26.11	0.7661	GAI.1
AT2G01080			Late embryogenesis abundant (L...		Potri.001G208000 [exp]	31.22	0.7415
AT1G74470			Pyridine nucleotide-disulphide...		Potri.004G195800 [exp]	33.76	0.6953
AT3G55760			unknown protein		Potri.008G159500 [exp]	40.24	0.7396
AT3G55560	AT-hook	AHL15, AGF2	AT-hook motif nuclear-localize...		Potri.008G058700 [exp]	41.27	0.7749

Compare expression of checked genes

Potri.002G018400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.