Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SSTP.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20160 889 / 0 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT1G20150 769 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT2G04160 525 / 1e-176 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59100 508 / 4e-170 Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 483 / 4e-160 ATSBT5.4 Subtilase family protein (.1) AT5G59090 481 / 4e-160 ATSBT4.12 subtilase 4.12 (.1.2.3) AT3G46850 476 / 9e-158 Subtilase family protein (.1) AT5G59120 471 / 3e-156 ATSBT4.13 subtilase 4.13 (.1) AT5G67360 472 / 6e-156 ARA12 Subtilase family protein (.1) AT4G34980 468 / 2e-154 SLP2 subtilisin-like serine protease 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G243000 [exp] 1170 / 0 AT1G20160 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.003G189200 [exp] 582 / 0 AT1G20160 583 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.011G050000 [exp] 527 / 3e-177 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 525 / 2e-176 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 518 / 8e-174 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 513 / 2e-172 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 506 / 4e-169 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 506 / 5e-169 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 503 / 1e-167 AT5G59810 939 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034544 [exp] 886 / 0 AT1G20160 846 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Lus10039087 [exp] 526 / 1e-176 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10014591 [exp] 520 / 2e-170 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10023048 [exp] 509 / 3e-170 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 509 / 3e-170 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 507 / 2e-169 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 503 / 7e-168 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 499 / 2e-166 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10016064 [exp] 498 / 3e-165 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039085 [exp] 492 / 1e-163 AT5G59810 827 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.002G018600.2 pacid=42778993 polypeptide=Potri.002G018600.2.p locus=Potri.002G018600 ID=Potri.002G018600.2.v4.1 annot-version=v4.1 ATGAAAGGTTATGCCATATGCTATGTATTGTTTCCTATCCTCTTTGTTGCATTTCTGGTAGAATCAGCAGGAGCAGCTGAGGGAGAGAAGGATGGTGTTT ATATTGTTTACATGGGAGCTGCGACTGGTTCTTCAAAGAATGATCATGCCCAGCTTCTGAGCTCTGTCTTGAAACGGAGAAAGAATGCTCTAGTGCAGAG CTATGTACATGGAATTTCAGGGTTTGCAGCTCGTTTATCAGCAACAGAGGCTCAATCAATCGCTAAAACCCCCGGAGTTGTATCTGTTTTTCGTGATCCT GTCTACCAACTCCACACAACTCGTTCATGGGATTTCCTGAAATACGGAACCGATGTAGTGATTGACTCAAGCCCCAATTCTGACTCCAACTCATCTTCTG GAGGATATGATTCGATCATTGGAATCCTAGACACAGGTATTTCGCCCGAGTCTGAGAGTTTTAGTGGCAAGGATCTGGGTCCAATACCGTCGCGCTGGAA CGGTACCTGTGTCGATGCTCATGATTTTTGTAATGGGAAAATAATCGGAGCAAGAGCTTACAATAGCCCCGACGATGACGATGACGATGACGGACTAGAT AATACACCAAGAGATATGATTGGGCATGGCACTCATGTAGCATCCACTGCAGCAGGAACTGTGGTACCTGATGCATCTTACTACGGATTAGCTACTGGGA CTGCCAAAGGTGGATCCCCTGGGTCAAGGATTGCTATGTACAGAGTGTGTACACGATATGGATGTCATGGGTCCAGTATATTAGCTGCATTCAGTGATGC CATTAAAGATGGTGTTGATATACTATCATTATCACTAGGGTCACCAGCATCATTCATGCTCGATTACAAGGAAGATCCAATAGCCATTGGAGCTTTCCAT GCTGTTGAAAATGGGATCAGTGTGGTCTGCTCTGCGGGGAATGATGGTCCATCCGAGGAAACAGTTACAAATGTTGCACCCTGGATTCTGACAGTTGCTG CTACAACCATAGACCGTAAATTTGAGTCAAACGTTGTGCTCGATGGGGGAAAGGTGATCAAGGGTGAAGCCATAAATTTTGCCAATATTGGAACATCTCC AGTACATCCATTGGTTTATGGAAAGTCAGCTAAGAAGACTGATGCAACCGAAAGCGAGGCTAGAAACTGCAACCCAGATTCCATGGATGGGGAAATGATC AAAGGAAAAATTGTCCTCTGTGACAATGATGACGATTCATACTCCTTTTATGACAAGGAGTACGAAGTGCAGAGTTTGGGAGGAATTGGTCTTGTTTTGG TTGATGACAAGATGAGCGGAGTTGCATCTAATTACAATGAATTCCCTTTGACTGTGATTAGTTCGAAGGATGCGCCCGGGATCCTTTCGTACCTTAACTC GACCAAAAATCCAGTTGCAACGATCCTACCTAGCACAGTGGTGTCACAATATAAGCCAGCACCTACTATCGCATACTTCTCATCCAGAGGGCCTTCCTCC CTCTCAAGGAATATCCTCAAGCCTGATATTGCGGCTCCAGGAGTAGACATACTTGCAGCTTGGATGGCGAATGATACAGAAGTGACTCTTAAAGGTAAAG AATCCCCAAAATTCAACATTATCTCGGGAACTTCCATGTCATGTCCGCATGTTTCTGGAATGGCTGCTGTGGTCAAATCCCAGTACCCCTCTTGGAGCCC CTCTGCAATCAAATCTGCCATTATGTCAACAGCATCTCAGATAAACAATATGAAGGCCCCAATAACAACAGAATTAGGTGCTATAGCCACGGCTTATGAT TATGGGGCAGGAGAAATAAGCACAAGTGGAGCACTGCAACCAGGGCTGGTTTATGAAACAACCACCACTGACTACTTAAACTTCCTATGCTATCACGGGT ACAACACATCCACAATTGAAGTTATTTCCAAAGACGTTCCAGATGGTTTTACTTGTCCTAAGGAATCAAGCGTCGACTTGATATCCAACATCAACTACCC GTCAATAGCAGTTTTCAACCTCACTGGAAAGCAGAGCAAGAATATTACCAGAACCCTAACAAATGTTGCTGGAGATGGTAACTCAACATACTCTCTAACC ATTGAAGCACCTAGCGGTCTAACCATCACCGTGAGCCCAACTAGCCTGCAATTTACGAAGAACAGCCAGAGATTGAGTTATCAAGTAATTTTCACTACAA CTGTCCCTTCATTACTCAAAGACGTGTTTGGGTCAATTATATGGACTAACAAAAAACTTAAAGTCCGCACTCCATTTGTTGCAAGCAGTAGGTAA
AA sequence Show only first row Show all	>Potri.002G018600.2 pacid=42778993 polypeptide=Potri.002G018600.2.p locus=Potri.002G018600 ID=Potri.002G018600.2.v4.1 annot-version=v4.1 MKGYAICYVLFPILFVAFLVESAGAAEGEKDGVYIVYMGAATGSSKNDHAQLLSSVLKRRKNALVQSYVHGISGFAARLSATEAQSIAKTPGVVSVFRDP VYQLHTTRSWDFLKYGTDVVIDSSPNSDSNSSSGGYDSIIGILDTGISPESESFSGKDLGPIPSRWNGTCVDAHDFCNGKIIGARAYNSPDDDDDDDGLD NTPRDMIGHGTHVASTAAGTVVPDASYYGLATGTAKGGSPGSRIAMYRVCTRYGCHGSSILAAFSDAIKDGVDILSLSLGSPASFMLDYKEDPIAIGAFH AVENGISVVCSAGNDGPSEETVTNVAPWILTVAATTIDRKFESNVVLDGGKVIKGEAINFANIGTSPVHPLVYGKSAKKTDATESEARNCNPDSMDGEMI KGKIVLCDNDDDSYSFYDKEYEVQSLGGIGLVLVDDKMSGVASNYNEFPLTVISSKDAPGILSYLNSTKNPVATILPSTVVSQYKPAPTIAYFSSRGPSS LSRNILKPDIAAPGVDILAAWMANDTEVTLKGKESPKFNIISGTSMSCPHVSGMAAVVKSQYPSWSPSAIKSAIMSTASQINNMKAPITTELGAIATAYD YGAGEISTSGALQPGLVYETTTTDYLNFLCYHGYNTSTIEVISKDVPDGFTCPKESSVDLISNINYPSIAVFNLTGKQSKNITRTLTNVAGDGNSTYSLT IEAPSGLTITVSPTSLQFTKNSQRLSYQVIFTTTVPSLLKDVFGSIIWTNKKLKVRTPFVASSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.002G018600 [exp]	0	1	Pt-SSTP.2
AT4G31330			Protein of unknown function, D...		Potri.006G278000 [exp]	1.00	0.8994
					Potri.001G382300 [exp]	3.74	0.8286
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.009G027300 [exp]	3.74	0.8587	MYB111.1,MYB023
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.005G243000 [exp]	5.29	0.8367	SSTP.3
AT4G04630			Protein of unknown function, D...		Potri.004G014000 [exp]	5.47	0.8564
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	5.65	0.8255
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133420 [exp]	6.00	0.8232
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G217800 [exp]	6.48	0.8310
AT5G14940			Major facilitator superfamily ...		Potri.017G152800 [exp]	10.39	0.7977
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	12.84	0.8223

Compare expression of checked genes

Potri.002G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.