Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75900 415 / 2e-144 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 394 / 3e-136 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75880 390 / 1e-134 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G75890 386 / 5e-133 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G14820 375 / 5e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 362 / 4e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 362 / 4e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 363 / 2e-123 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G43570 352 / 3e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 343 / 2e-116 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242800 [exp] 583 / 0 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 281 / 3e-92 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 279 / 5e-91 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 277 / 3e-90 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 270 / 9e-88 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.011G061900 [exp] 269 / 2e-87 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 268 / 4e-87 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 265 / 9e-86 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.005G205100 [exp] 265 / 3e-85 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034540 [exp] 466 / 8e-165 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 466 / 1e-164 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 430 / 1e-150 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 389 / 5e-134 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003719 [exp] 386 / 4e-133 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10017279 [exp] 379 / 3e-130 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 370 / 7e-127 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017278 [exp] 356 / 1e-121 AT1G75900 376 / 5e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028425 [exp] 345 / 4e-113 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026074 [exp] 327 / 9e-110 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.002G018800.1 pacid=42779085 polypeptide=Potri.002G018800.1.p locus=Potri.002G018800 ID=Potri.002G018800.1.v4.1 annot-version=v4.1 ATGCACAAGCAAGGAACCATTCGAGACGCCAAAAACATTTTTCTCCTCCTTCGTCAACCTAATCACATCAGGAGGGATCGAGAAAGCCAGGGAAGATCAT CAAAAACGATGAAGTTTCTTCTATTGAGACTAACGTCTTGTTGCTTTTATCCTACCTTGTTGCTCTTTCTCACTGTTGTATGCAGCGTTAAATCTTCGGT GAAGCTACCACCTAATGTTACTGTTCCAGCACTTCTGCTATTTGGGGATTCAATAGTTGATGCAGGCAACAACAACAATATTAAAACACTTGTCAAATGC AACTTCCCTCCTTACGGCAAGGATTTTGAAGGAGGAGTTCCTACAGGAAGGTTTTGTAATGGAAAAGTTCCTTCAGACATCATAGCTAAAGAATTGGGGA TTAAGGACACATTGCCAGCATATTTGGACCCAACAGTTCTACCCCAAGATCTGGTAACAGGAGTAACCTTTGCTTCAGGTGGCTCAGGATTTGATCCCTT GACACCCAAATTAGTGTCAGTTATATCGTTGTCGGATCAGTTAAAATATTTGAAAGAATACATAGGGAAGCTGGAGGCGATGATTGGAGAGGAAAAAACA AAGTTCATCTTAAAGAATAGTCTATTTTTCGTAGTAGCAGGCAGTGATGACATTGCCAATACCTATTTTACAATACGTGCTAGGAAATCGCAATACGATG TTCCGGCTTACACTGATCTAATGGCTAACTCAGCTTCTACTTTCGCGCAGGAATTATATGAACTCGGAGCAAGAAGGATAGGATTTTTCAGTACACCACC AATTGGATGTGTTCCATCTCAGAGAACTTTAGCTGGGGGAGCTGAAAGAAAGTGCGCAGAAAACTTAAACGAAGCAGCGAAGTTATTCAACTCCAAGCTG TCTAAGAAGTTGGATTCTCTTGGAAGCAGCCTGCCTAATGGCAGATTTGTCTATATTGATGTCTACAATCTACTGCTAGATCTCATTCAAAATCCTAAAA AATATGGTTTTCAAGTTGTGGATAAAGGATGTTGTGGTACTGGAGATTTGGAGGTATCTATATTATGTAATCAATATACTCCTGTGAAGTGTGCAAATGT TTCCGATCATATATTTTGGGACAGCTACCATCCAACTGAAAGTGCTTATAAGGCACTCGTTTCTCCTCTCCTCGGAGAAAATTTGAACAAATTCTTTTGA
AA sequence Show only first row Show all	>Potri.002G018800.1 pacid=42779085 polypeptide=Potri.002G018800.1.p locus=Potri.002G018800 ID=Potri.002G018800.1.v4.1 annot-version=v4.1 MHKQGTIRDAKNIFLLLRQPNHIRRDRESQGRSSKTMKFLLLRLTSCCFYPTLLLFLTVVCSVKSSVKLPPNVTVPALLLFGDSIVDAGNNNNIKTLVKC NFPPYGKDFEGGVPTGRFCNGKVPSDIIAKELGIKDTLPAYLDPTVLPQDLVTGVTFASGGSGFDPLTPKLVSVISLSDQLKYLKEYIGKLEAMIGEEKT KFILKNSLFFVVAGSDDIANTYFTIRARKSQYDVPAYTDLMANSASTFAQELYELGARRIGFFSTPPIGCVPSQRTLAGGAERKCAENLNEAAKLFNSKL SKKLDSLGSSLPNGRFVYIDVYNLLLDLIQNPKKYGFQVVDKGCCGTGDLEVSILCNQYTPVKCANVSDHIFWDSYHPTESAYKALVSPLLGENLNKFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Potri.002G018800 [exp]	0	1
AT3G50120			Plant protein of unknown funct...		Potri.006G042946 [exp]	1.00	0.9385
AT1G53440			Leucine-rich repeat transmembr...		Potri.011G073591 [exp]	2.00	0.9105
AT5G59845			Gibberellin-regulated family p...		Potri.014G020100 [exp]	5.65	0.8846
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.013G083101 [exp]	15.19	0.9272
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	24.81	0.8001
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G096000 [exp]	31.36	0.8913
AT5G01870			Bifunctional inhibitor/lipid-t...		Potri.016G136000 [exp]	31.96	0.8909	Pt-LTP2.2
AT5G25460			Protein of unknown function, D...		Potri.003G059800 [exp]	32.68	0.7929
AT3G04080		ATAPY1	apyrase 1 (.1)		Potri.019G031200 [exp]	37.70	0.8890	Pt-APY1.2
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G009000 [exp]	42.66	0.7686

Compare expression of checked genes

Potri.002G018800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.