Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20100 71 / 4e-14 unknown protein AT1G75860 69 / 3e-13 unknown protein AT2G17787 61 / 1e-10 unknown protein AT4G35940 57 / 5e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242400 [exp] 354 / 2e-123 AT1G20100 51 / 3e-07 unknown protein Potri.005G242300 [exp] 172 / 1e-52 AT2G17787 / unknown protein Potri.009G134800 [exp] 54 / 4e-08 AT4G35940 / unknown protein Potri.017G058500 [exp] 45 / 4e-05 AT5G43490 85 / 5e-19 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034539 [exp] 82 / 3e-17 AT1G75860 56 / 1e-08 unknown protein Lus10033130 [exp] 78 / 5e-16 AT1G75860 51 / 5e-07 unknown protein Lus10013567 [exp] 75 / 2e-15 AT2G17787 45 / 3e-05 unknown protein Lus10017274 [exp] 57 / 5e-09 AT2G17787 44 / 7e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G019200.1 pacid=42777578 polypeptide=Potri.002G019200.1.p locus=Potri.002G019200 ID=Potri.002G019200.1.v4.1 annot-version=v4.1 ATGTCTCGGTGCTTCCCTTACCCGCCTCCGGGCTACTACCGGATCGAGTCGATTAAGATCCAAAAGGAAAAGGAGCTTTCTGTAACAGAAAGCTATAGAG AGGCAAAGAAGGAGAAGAAAGGAAGGAGGCAGAGGAAAGAAAACAGTAACCAAACTGGTTATTACGGGGTTAAGTCTCAGCAAGAGGGGAAAGGAAGGCT TCCAAAGGAAAAAAGGGAAGAAGCTGAAAAGAGTGGTCTTACTGAAGAACACAATGAGCCCGTATGCCTTCAAAATGTTTGCTATTTGTCTGATGATGGC ATTCGGAGCAACAAGAGGAGGAAACTGGACTCCTCAACAACTACTGATGACAAACCTCGCAATGTCTTTCGCATTCGGCTGCCCTTGACAAGGCATAAAG AGCCAGATGTGTCTCTCAATAGTAAAGGGTTGTGCTCTACTTCGGGTGGGGCAGATTCTGTTTCTGGGCAGAGTGAAATTGTCCGTTTATCTGATCAAGA AACTGTCAACTCAAAGGCTGGGGAACTTGCATCTCCACCAGAAAATATACCTTGCAGTTCAGTTTCAGATAAGTTGGAGAGCTCTGTTTCCGAAACTTCT TGGTTCAGATTTCATGATCGCAAGACGTTGAAAGCTGACTCACAATACAAAGGTTTAGTTGAGGATTGGGTTCCACCACCTCTTCAGTTTGAGCTTAAAG ATTCTGACGATGAAGAGTGGCTTTTTGGGACCTTAAAGCAAGAAAGGCATGGAAACAAGAGACTAAACGCACGCCATGATATCTCGTGTCGTGAAAGTTC TACTCTGTGGCCACGAGCACATTACTTGCCCGAGTCTGATGTTTACGCTTTACCGTATACAATTCCATTTTGA
AA sequence Show only first row Show all	>Potri.002G019200.1 pacid=42777578 polypeptide=Potri.002G019200.1.p locus=Potri.002G019200 ID=Potri.002G019200.1.v4.1 annot-version=v4.1 MSRCFPYPPPGYYRIESIKIQKEKELSVTESYREAKKEKKGRRQRKENSNQTGYYGVKSQQEGKGRLPKEKREEAEKSGLTEEHNEPVCLQNVCYLSDDG IRSNKRRKLDSSTTTDDKPRNVFRIRLPLTRHKEPDVSLNSKGLCSTSGGADSVSGQSEIVRLSDQETVNSKAGELASPPENIPCSSVSDKLESSVSETS WFRFHDRKTLKADSQYKGLVEDWVPPPLQFELKDSDDEEWLFGTLKQERHGNKRLNARHDISCRESSTLWPRAHYLPESDVYALPYTIPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20100			unknown protein		Potri.002G019200 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.003G025904 [exp]	10.63	0.8004
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Potri.007G020100 [exp]	21.56	0.7259
AT1G01710			Acyl-CoA thioesterase family p...		Potri.014G083300 [exp]	24.73	0.7637
AT5G66270	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G115901 [exp]	31.24	0.6848
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Potri.018G128100 [exp]	36.00	0.6898
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138700 [exp]	38.60	0.7090
					Potri.019G012483 [exp]	41.35	0.7716
AT4G02550			unknown protein		Potri.001G157750 [exp]	46.90	0.7656
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014374 [exp]	55.65	0.7624
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Potri.005G220500 [exp]	55.79	0.7654

Compare expression of checked genes

Potri.002G019200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.