Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35030 388 / 5e-127 Protein kinase superfamily protein (.1.2.3) AT2G16750 376 / 2e-120 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 380 / 7e-120 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 361 / 6e-113 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 350 / 4e-109 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G65530 256 / 7e-77 Protein kinase superfamily protein (.1) AT5G10520 256 / 2e-76 RBK1 ROP binding protein kinases 1 (.1) AT4G32710 251 / 1e-75 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT3G24550 257 / 4e-75 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G55200 257 / 9e-75 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175100 [exp] 450 / 4e-148 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 437 / 5e-143 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 377 / 8e-119 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 369 / 3e-116 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 357 / 5e-112 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 355 / 1e-110 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G096100 [exp] 269 / 5e-80 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 263 / 1e-77 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.007G011700 [exp] 256 / 2e-76 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013566 [exp] 446 / 1e-148 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10017273 [exp] 447 / 9e-148 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10000968 [exp] 389 / 2e-123 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 387 / 1e-122 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 374 / 5e-119 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 367 / 5e-116 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 339 / 1e-105 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 338 / 1e-104 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019990 [exp] 260 / 3e-76 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10011098 [exp] 259 / 7e-76 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G019300.2 pacid=42779636 polypeptide=Potri.002G019300.2.p locus=Potri.002G019300 ID=Potri.002G019300.2.v4.1 annot-version=v4.1 ATGCTTAAAATGAATGCTAGCGGAGGTTGGAGATTAAGGTTGGACCAGAGAGGCTTGAACGCAATGAAAGGAGAATTAAGCGTTCTTGAGGGAATTTTAG CAGAAGATTTGAAGAAAATGGAACAGGTTTTTTATGGAAACCTGATAGGCAATTCTTGTGCAGAGTGTCTCAACTGTGATCTCTCTGAAGGTGCCAAATT TGTGCATCAGGTGCTCACCAGTTCAGATAATGATTTTCAAGACAGCTTAGGCACAAAAGACTGTTCACGATGCTATAAGGGATTGGTGAAAAGGGTTAGT CCTGTTTCAAGTTCATGCTCTATCCAGAAGGTTTTGAAGAAAGCGGTAAAGCGTTGTGCAGCTCTGTCAGTGGAACTAAACCCAGGAAACTCTCCCGGGA ACAGGCGTTCATGGGATAAGTTTTTTGCCAATCACTTGCCTGCAACTATCGTTGTCTGGGCTGCTCAAGAGGCGAAAATAATGCTCAAAGGGGATTTAAT TAAACTGATGGGAGGTTTCAAGTTAAATCCTAAGCCTTGTCTTGATACAAACCATGCCGGTTTAAGAGAAGAAAGGGTGCCTGATGTTAATGAAATCACA TCTTGCACATTTCGAAGAATTGAAGAGGTATCAAGAGATGACAGTGCTTACTTGAAAGACAGCAATGGTTACAAGGCAAAAGTTACTTTTAGATCAATTT CTGTAATCAGAAGAGCGCTGCCTGAGTCAGAGCTTGGTTGGCCTCTTCTTCCAAGAACCAATCGTTCAGCTCTGGACACGTTGAGAAATTCGGAAGTAGG GAATATGTCACTGGTCGAAAGGAATTCAAATGAAATGAAGATTCCTTCTAATCTCAAAACAGATTATTCTATTGTCAAGGAATGCAAGATTGAAGGGACT GTTATCCAATTGTTTCATACCTCTGAAAATCGGTCAAGAGATGGCAGCAGCAATGGAGAAGATGCGAGATTTGGCTTTAAGCCGGAAGTTTCTTCACATC CAGATTATGTACTTACCAAAAACTCCACACGATCAGGGCCTGGCTGGCCTCTTCTCCGTGTAAAAACTTCTGCATCTTTAGAATCTTTTCAAGAATCTCA GGCTGAAAAATTTTCAGTGGTTCAATGGGTTTCGAGTCTAACCGATCGATCTGAAGAAGCAACTACGAAATTTCAAATTGATTTTGTTTCCAAAGAAGTA GAGAGCTATGTTGAAAACAAGATGCGTGGTTACAAGGATAAGAATATGGGGGCTTGCTTAGCAGCGCCAATGAAGCTGCCAAAGAAGATGGACTGTTTCT TTAAAGTGTGCACGTCTGGCTGCAAACAGTTTGGTTATGAGGAGCTGAAGAGAGCAACTCGTCAATTCTCCTCAGAGAACTTCGTCGGAGAGGGAGGGTG TAGCAACGTATATAAAGGATATCTCCCTGGAGGTAAGCAAGTGGCAGTGAAGATTCTAAAACAGTACAAGGAAGCATGGAGTGACTTCTCCTTGGAAATA GATATCATGTCTTCGTTAAAGCATAAGCACATTACACCTCTAATTGGCATATGCGTCGAGGATAACCATTTAATTCTGGTCTATGATTTCTTATCCCAGG GGAGCTTAGATGAGAGACTACAAGGTAAGAGAAGGAAGTCTGTATTGCCATGGAAAGTGAGGTTCAAAGTGGCTATTGCGATTGCCGAGGCTCTAAATCA TCTTCACAACGAATGCTCTCGGCCTGTTATTCACAGAGATGTTAAATCTTCGAACATTCTCCTATCAAAAGATTTTCAGCCACAGTTATCTGATTTTGGG CTTGCCATATGGGGACCTGCTGATTCAGCATATGCAATACATAGTGATGTTGTTGGAACTTTTGGTTATATAGCTCCTGAATATTTCATGAATGGGAGGG TCAGTGACAAAATTGATGTGTACTCCTTTGGCATAGTTCTCCTTGAATTGTTAACAGGAAAGAAACCAATCATTTCCAAAGATCTGAAAGGACAGGAGAG CCTGATTAAGTGGGCAACACCGTTATTAGAGAGTGGGAATCTAAAAGCTTTGCTGGATCCAAAGACGAATGGAAACTTTGACGTTGTTCAAATGCAAAGA ATGGTTCTTGCAGCAACACTCTGTGTCAGACAAACAGCTAGATTACGTCCTAAAATTAGCCAGATACTTGAGCTATTAAGAGGTGAAAAAGACGAAGGAG AATGGGTGAACAGCTATGCTAATGATTTAAAAAAGTCAAGTGATGAGGAACTTGATGACCTTTTCCTGGATTTTGGCTGCAAACCAGGGCTGGAGACTTC ATTTCTGCAATTAAATGATGATGATGCATCACATAGTAGTGTTGATACTGCATCATTAAGTAGAGTTGATGTCACTACGCCAAGTAGGGCAGGACGAAAG AGCCGCTCTATGTTGAGAGACTACCTGAAAGAATCGCAGGGTTGA
AA sequence Show only first row Show all	>Potri.002G019300.2 pacid=42779636 polypeptide=Potri.002G019300.2.p locus=Potri.002G019300 ID=Potri.002G019300.2.v4.1 annot-version=v4.1 MLKMNASGGWRLRLDQRGLNAMKGELSVLEGILAEDLKKMEQVFYGNLIGNSCAECLNCDLSEGAKFVHQVLTSSDNDFQDSLGTKDCSRCYKGLVKRVS PVSSSCSIQKVLKKAVKRCAALSVELNPGNSPGNRRSWDKFFANHLPATIVVWAAQEAKIMLKGDLIKLMGGFKLNPKPCLDTNHAGLREERVPDVNEIT SCTFRRIEEVSRDDSAYLKDSNGYKAKVTFRSISVIRRALPESELGWPLLPRTNRSALDTLRNSEVGNMSLVERNSNEMKIPSNLKTDYSIVKECKIEGT VIQLFHTSENRSRDGSSNGEDARFGFKPEVSSHPDYVLTKNSTRSGPGWPLLRVKTSASLESFQESQAEKFSVVQWVSSLTDRSEEATTKFQIDFVSKEV ESYVENKMRGYKDKNMGACLAAPMKLPKKMDCFFKVCTSGCKQFGYEELKRATRQFSSENFVGEGGCSNVYKGYLPGGKQVAVKILKQYKEAWSDFSLEI DIMSSLKHKHITPLIGICVEDNHLILVYDFLSQGSLDERLQGKRRKSVLPWKVRFKVAIAIAEALNHLHNECSRPVIHRDVKSSNILLSKDFQPQLSDFG LAIWGPADSAYAIHSDVVGTFGYIAPEYFMNGRVSDKIDVYSFGIVLLELLTGKKPIISKDLKGQESLIKWATPLLESGNLKALLDPKTNGNFDVVQMQR MVLAATLCVRQTARLRPKISQILELLRGEKDEGEWVNSYANDLKKSSDEELDDLFLDFGCKPGLETSFLQLNDDDASHSSVDTASLSRVDVTTPSRAGRK SRSMLRDYLKESQG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35030			Protein kinase superfamily pro...		Potri.002G019300 [exp]	0	1
					Potri.002G155350 [exp]	2.00	0.9197
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G328000 [exp]	3.74	0.9366
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413400 [exp]	4.47	0.9300
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.017G066860 [exp]	5.19	0.9244
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.001G084000 [exp]	6.92	0.8882
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Potri.001G070900 [exp]	9.48	0.8958
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.011G112400 [exp]	10.39	0.9087
					Potri.005G040650 [exp]	13.22	0.8799
AT5G50080	AP2_ERF	ERF110	ethylene response factor 110 ...		Potri.002G065600 [exp]	14.07	0.9075
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024500 [exp]	15.87	0.8969

Compare expression of checked genes

Potri.002G019300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.