Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75850 1271 / 0 VPS35B VPS35 homolog B (.1) AT2G17790 1156 / 0 ZIP3, VPS35A ZIG suppressor 3, VPS35 homolog A (.1) AT3G51310 1067 / 0 VPS35C VPS35 homolog C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242100 [exp] 1429 / 0 AT1G75850 1309 / 0.0 VPS35 homolog B (.1) Potri.005G110600 [exp] 1288 / 0 AT2G17790 1249 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1) Potri.007G061520 [exp] 138 / 1e-38 AT1G75850 119 / 8e-33 VPS35 homolog B (.1) Potri.007G061540 [exp] 0 / 1 AT2G17790 0 / 1 ZIG suppressor 3, VPS35 homolog A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013565 [exp] 1287 / 0 AT1G75850 1306 / 0.0 VPS35 homolog B (.1) Lus10017272 [exp] 1282 / 0 AT1G75850 1304 / 0.0 VPS35 homolog B (.1) Lus10041880 [exp] 1220 / 0 AT2G17790 1261 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1) Lus10028427 [exp] 1220 / 0 AT2G17790 1270 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03635 [poplar] [flax] Vps35 Vacuolar protein sorting-associated protein 35
Representative CDS sequence Show only first row Show all	>Potri.002G019400.6 pacid=42779544 polypeptide=Potri.002G019400.6.p locus=Potri.002G019400 ID=Potri.002G019400.6.v4.1 annot-version=v4.1 ATGATCTTAGCCGGAATAGAAGACGAAGACAAATGGCTAGCAGAAGGAATTGCCGGCATTCAACACAACGCCTTTTACATGCATCGCGCTCTGGACTCGA ACAATCTCCGAGACGCTCTCAAATGCTCAGCTCTAATGCTATCAGAGCTTCGAACTTCTAAACTCTCTCCTCACAAATACTTCGATCTCTATATGAGAGC GTTTGATGAATTGAGGAAACTAGAGATGTTTTTCAAAGATGAGAGTAGACATGGCGTTTCGATTGTTGATTTATACGAACTTGTGCAACATGCTGGAAAT ATATTGCCTAGACTGTATCTACTGTGTACAGTAGGATCGGTGTATATCAAATCGAAGGAGGCTCCGGCTAAGGATGTGCTCAAGGATCTTGTAGAGATGT GTCGCGGTGTTCAACATCCGATTCGCGGATTGTTTTTGAGGAGTTATCTTGCTCAAGTTAGTAGAGATAAGTTACTGGACCTTGGGTCTAAGTATGAAGG AGCTGAGGACACAGTAATGGATGCTGTAGAATTTGTGCTGCAAAATTTCACTGAGATGAATAAGCTTTGGGTCCGGATGCAGCATCAGGGGCCTGTTTGG GTTAAAGAGAAGCTGGAAAAGGAAAGAAGCGAGCTTCGTGATCTTGTAGGGAAGAACCTCCATGTTCTTAGTCAGATAGAGGGCGTGGATCTTGAGATTT ACAGAAACACCGTTCTTCCCAGAGTTTTAGAGCAGGTTGTCAACTGTAAAGATGAGCTTGCACAGTATTATTTAATGGACTGCATAATTCAAGTCTTTCC AGATGAGTACCACTTGCAGACCCTTGAGACATTGTTGGGGGCCTGCCCCCAGCTTCAGCCAACAGTTGACGTTAAGACAGTGCTATCACGGTTAATGGAA AGATTATCCAATTATGCTGCTTCAAGTGCGGACGTTTTACCCGAGTTCCTGCAAGTGGAGGCATTTGCTAAATTGAGCAGTGCTATTGGAAAGGTAATTG AAGCACATGTTGACATGCCTATTGTTGGAGCCGTTGCTTTGTATGTCTCTCTCCTCACATTTACACTCCATGTTCATCCTGAACGGCTTGATTATGTGAA TCAAGTACTGGGGGCATGTGTTAAGAAGCTCTCTGGAAAGCCAAAACTTGAAGATATCAGAGCAAAAAAACAAATTGTTGCACTTCTGAGTGCTCCATTA GAAAAGTACAACGATATTGTCACTGCCTTGACACTGTCTAATTACCCTCATGTCATGGACTGCCTTGATTATGAAACAAACAAAGTCATGGCTATGGTTA TTATTCAGAGCGCTATGAAAAATAACACTTGCATTTCCACAGCTGACAAGGTTGAGGTGTTGTTTGAACTAATAAAAGGGCTAATAAAGGATTTGGATGA GACTGCTACAGATGAGCTCGATGAGGAGGATTTCAAGGAAGAACAAAATTCTGTTGCTTGCCTCGTACATATGCTTTATAATGATGATTCAGAGGAAATG TTGAAGATTATCTGTGCTGTGAGGAAGCATATAATGGCTGGAGGATCGCAACGATTACCTTTTACTGTCCCTCCTCTCATATTTTCTGCACTCAGGTTGG TGAGAAAGTTGCAAGATCAGGATGGAAATGTAGTGGGAGAAGAAGAGCCTGCAACGCCTAAGAAAGTTTTTCAGCTCCTGAACGAGACAATTGAGGCTCT TTCATCTGTTTCCTCACCTGAGCTGGCATTAAGGTTATACTTGCAATGTGCTGAGGCTGCCAATGACTGTGATCTTGAGCCAGTTGCTTATGAGTTTTTT ACACAGGCATTCATATTATATGAGGAAGAAGTTGCGGACTCCAAGGCTCAGGTGACTGCATTACATCTAATAATTGGGGCTCTCCAGAGGATGAATGTAT TTGGTGTTGAGAACAGGGATACTCTGACACACAAGGCCACGGGACATTCTGCAAAGCTTTTGAAGAAACCTGATCAGTGCAGAGCAGTCTACGCATGCTC ACATCTATTTTGGGTTGATGATCAGGATGGCATCAAGGATGGGGAAAGGGTCCTGCTTTGCCTCAAGCGTGCCTTGAGGATTGCAAATGCAGCTCAGCAG ATTGCCAATGCAACAAGGGGTTGCAGTGGACCGGTCACACTGTTCGTTGAGATATTAAACAAGTACCTGTACTTTTTTGAGAAAGGAAACCCGCAGATTA CTAGTGCTGCAATACAAGGACTGATCGAATTAATTACTAATGAAATGCAAAGTGACTCCACCACGCCAGATCCAGCATCAGATGCCTTCTTTGCCAGCAC AATTCGGTACATTCAGTTCCAGAAACAAAAGGGTGGTGTTATGGGTGAGAAATTTGGGCCTATCAAGGTGTAA
AA sequence Show only first row Show all	>Potri.002G019400.6 pacid=42779544 polypeptide=Potri.002G019400.6.p locus=Potri.002G019400 ID=Potri.002G019400.6.v4.1 annot-version=v4.1 MILAGIEDEDKWLAEGIAGIQHNAFYMHRALDSNNLRDALKCSALMLSELRTSKLSPHKYFDLYMRAFDELRKLEMFFKDESRHGVSIVDLYELVQHAGN ILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLLDLGSKYEGAEDTVMDAVEFVLQNFTEMNKLWVRMQHQGPVW VKEKLEKERSELRDLVGKNLHVLSQIEGVDLEIYRNTVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDVKTVLSRLME RLSNYAASSADVLPEFLQVEAFAKLSSAIGKVIEAHVDMPIVGAVALYVSLLTFTLHVHPERLDYVNQVLGACVKKLSGKPKLEDIRAKKQIVALLSAPL EKYNDIVTALTLSNYPHVMDCLDYETNKVMAMVIIQSAMKNNTCISTADKVEVLFELIKGLIKDLDETATDELDEEDFKEEQNSVACLVHMLYNDDSEEM LKIICAVRKHIMAGGSQRLPFTVPPLIFSALRLVRKLQDQDGNVVGEEEPATPKKVFQLLNETIEALSSVSSPELALRLYLQCAEAANDCDLEPVAYEFF TQAFILYEEEVADSKAQVTALHLIIGALQRMNVFGVENRDTLTHKATGHSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQ IANATRGCSGPVTLFVEILNKYLYFFEKGNPQITSAAIQGLIELITNEMQSDSTTPDPASDAFFASTIRYIQFQKQKGGVMGEKFGPIKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.002G019400 [exp]	0	1
					Potri.010G031250 [exp]	1.41	0.9130
AT3G28430			unknown protein		Potri.018G140800 [exp]	1.41	0.9026
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.015G026100 [exp]	1.73	0.8985
AT1G49160		WNK7	Protein kinase superfamily pro...		Potri.005G057300 [exp]	2.44	0.8854
AT1G45150			unknown protein		Potri.014G180700 [exp]	4.00	0.8892
AT5G12370		SEC10	exocyst complex component sec1...		Potri.002G164100 [exp]	5.47	0.8649
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G472800 [exp]	6.00	0.8680	WRKY2.2
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.010G049100 [exp]	9.48	0.8787
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.011G139300 [exp]	9.53	0.8810	ATMAK3.5
AT4G03115			Mitochondrial substrate carrie...		Potri.014G135530 [exp]	10.58	0.8305

Compare expression of checked genes

Potri.002G019400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.