Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27940 1655 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 1616 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28860 1205 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 1191 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1177 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT2G36910 1123 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT2G47000 989 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G62150 985 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT3G28390 977 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT1G02520 961 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081100 [exp] 1224 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.001G139600 [exp] 1197 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.003G094400 [exp] 1194 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139700 [exp] 1166 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.006G123900 [exp] 1134 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.016G093600 [exp] 1133 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.014G113500 [exp] 973 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.017G085000 [exp] 970 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 968 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017271 [exp] 1669 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10017270 [exp] 1669 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10030674 [exp] 1192 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1191 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 1147 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10004571 [exp] 1050 / 0 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10038049 [exp] 983 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 980 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10024162 [exp] 962 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10009989 [exp] 958 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.002G019600.1 pacid=42777584 polypeptide=Potri.002G019600.1.p locus=Potri.002G019600 ID=Potri.002G019600.1.v4.1 annot-version=v4.1 ATGGAAGAATTAGAGCTTACCTCCGATCAGGTCTTGGACCAGAATTCACTTCCGAAGATGGAGCGGCCATCAAATTCAAGCAAAAAGCCTACTGTTTCAA TTTTTGGTCTATTTTCTGCTGCTGATAAATTTGACCATTTCTTGATGTTTTTAGGACTCGTCGGTTCATGCGCTCATGGTGCTGTGTTTCCTTTGTTCTT TGTTTTGTTTGGTCATCTGATTGATTCTCTCGGACATGTACGTTCTGATCCTCATCAAATGTCTTCACAGGTGTCCAAGTATTCCTTGGACCTGGTGTAT TTGGGGCTTGGAGTTTTTGTAGCTGGATGGATTGGTGTTGCATCTTGGATGCAAACTGGTGAGAGGCAGACAGCACGTTTGCGTCTAAAGTATCTTCAGT CTGTTTTAAGAAAGGACATGAACTTTTTCGACATAGAAGCTAGAGATTCCAACATTTTATTTCATATATCAAGTGATGCCATACTAGTGCAAGATGCAAT AGGTGACAAGACAGGCCATGCAGTTCGTTATCTTTCTCAGTTTTTCATTGGATTCGTTTTTGGGTTTAAGTCAGTTTGGCAACTTACGCTCCTCACCTTG GCTGTGGTTCCGTTGATGGCCGTTGCCGGGGGAGCCTATACTATAATTATGTCTACCTTGTCAGAAAAGGGTGAGGCCGCTTATGCTGAAGCTGGCAAGG TTGCAGATGAGGCTATTTCGCAGATACGTACAGTATACTCATTCGTAGGAGAGGAGAAAGCACTAGAAGAGTACTCCAAGTCCCTTAAGAAAGCTCTTAA ATTGGGGAAGAAAAGTGGGGTTGCAAAAGGAGTTGGTATTGGATCTACATATGGACTCCTATTTTGTGCTTGGTCAATGCTTCTCTGGTATTCCAGCATA CTAGTTAGGCGTGGGGACACAAATGGTGCAAAAGCTTTCACAGTGATACTCAATGTCATATTTAGTGGATTTGCTCTTGGCCAAGCTGCTCCAAATATTG CTGCTATTTCCAAAGGCCGTGCTGCTGCCGCCAGTATTATGAGCATGATTGAAACAGATTCCAGCCCTTCTAAAAATTTAGTAGATGGAATTGTGATGCC AAAAGTATCTGGGCAGATCGAATTCTGCGAGGTCTGTTTTTCTTATCCCTCACGGAGCAACATGGTCTTCGAAAATTTGAGCTTCTCAATAAGCGCTGGG AAGAACTTTGCAGTTGTAGGTCCAAGTGGTTCAGGGAAAAGCACTGTTATATCCATGGTTCAACGTTTCTATGAACCTACTTCAGGTAAAATTCTGCTGG ACGGGCATGATCTTAAAACTCTCGAATTGAAATGGTTAAGAGAACAAATGGGATTGGTCAGTCAAGAACCAGCATTGTTTGCTACAACCATAGCTGGCAA TATTCTGTTTGGTAAAGAAGATGCAAGCATGGATCAGATTTATGAAGCTGCTAAAGCTGCCAATGTACATTCTTTTGTTCTACAGTTACCTGATGGTTAT CACACCCAGGTTGGAGAGGGAGGAACACAGCTTTCTGGTGGTCAAAAACAAAGACTGGCTATAGCAAGAGCAGTGCTGAGGAATCCAAAGATATTACTTT TAGATGAGGCCACCAGTGCTCTTGATGCAGAATCTGAACTCATTGTGCAACAAGCCCTGGAGAAAATTATGGCAAATCGGACTACAATTGTCGTCGCACA CCGGTTATCTACAATTCGAGATGTTGATACAATCATTGTTTTGAAAAATGGCCTAGTTGTTGAAAGTGGGAGTCACTTGGAATTGATATCCAAGGGAGGA GAATATGCAAGCATGGCGAGTCTGCAAGTATCAGAACATGTTACAGATGCAAGCTCGATACATTCTGGAACAGCTGGAAAATCTAGCTTTCGAGAACTTA CAAGCAGTCAAAATCAGGAAGTTACAACAAGAGAGCTGAAGTCAAATGATGAAAACTTGTCCCCGGCTAACTTTTCTCCCACCCCATCCATTTGGGAACT AGTAAAACTAAATGCACCGGAATGGCCTTATGCAGTGCTTGGGTCAGTTGGCGCAATGATGGCTGGCATGGAAGCACCTCTGTTTGCCCTTGGAATTACA CATATGCTGACTGCATTTTATTCTCCTGATAATTCTCAAATGAAAAAAGAGGTTCATCTCGTAGCTCTTATTTTTGTTGGAGCGGCTGTTGTTACTGTTC CTATTTATATACTTCAACACTACTTTTATACACTAATGGGGGAGCGTCTGATAACTCGTGTTCGCCTATCAATGTTCTCAGCTATCCTTTGCAATGAGAT TGGCTGGTTTGATTTAGATGAGAATAGTACTGGCTCACTGACATCAACTTTAGCTGCCGATGCGACCTTAGTTCGAAGTACTCTTGCTGACCGTCTCTCA ACAATGGTGCAGAATGTATCACTCACTGTAACAGCATTTGTTATCGGCTTTTCATTAAGTTGGAGGGTGTCAGCTGTTATCATTGCTTGCTTCCCTCTAC TTATTGGCGCTGCCATAACTGAGCAATTATTTCTCAAGGGATTTGGGGGAGACTATCGTTCTTACACTAGAGCAAATGCCGTGGCACGTGAAGCAATTGC GAATATTCGTACCGTAGCTTCATTTGGTGCTGAAGAACGAATTGCTCATCAGTTTGCATCTGAACTAAACAAACCAAACAAACAAGTACTTTTACAGGGA CATATATCAGGCATTGGATATGGTGCATCCCAGTTTTTCTGTTTTTGTGCATATGCACTTGGTATTTGGTATGCATCAGTAGTAATCTCACACAACGAAT CCGATTTCGATCATGTCATGAAGTCCTTCATGGTTTTGGTAATGACTTCATATGCTATAGCAGAAACGGTAGCGCTCACACCAGACATTATGAAGGGTTC ACAAGCACTAGAATCGGTTTTCAGTATTCTCCATAGGAAAACAGCCATGGACCCTGATGATCCCACGTCAAAGGTGATAACTGATATCAAAGGGGACGTA GAGCTCAGACATGTGAGTTTCAAGTATCCTGCAAGGCCTGATACAATTATTTTCGAGGATTTAAATCTCAAAGTTTCAGCTGGCAAAAGCCTTGCTGTGG TGGGCCAAAGTGGATCAGGGAAAAGTACTGTAATTGCCTTGATACTGAGGTTCTACGACCCCATTTCCGGAACAGTTCTTATTGATGGATATGATGTTAA GACCTTGAACCTGAAATCATTAAGGCGGAAAATAGGACTGGTTCAACAGGAGCCAGCATTGTTTTCGACAACAATTTACGAAAACATCAAGTATGGGAAT AAAAATGCTTCAGAAATTGAAGTGATGAAGGCAGCCAAAGCGGCCAATGCTCATGGATTCATCAGCAGAATGCATGAAGGATACCATACTCATGTGGGTG ATAGAGGACTGCAGTTATCAGGGGGGCAGAAACAGAGAATAGCAATTGCTAGAGCTATACTTAAAGACCCTTCTATTCTTCTTTTGGATGAAGCTACAAG TGCCTTGGATACAGCATCTGAAAAGTTGGTCCAAGAGGCTTTAGATAAACTCATGGAAGGCAGAACAACAGTTCTGGTAGCACACAGGTTGTCAACTGTT CGCGACGCTGATAGCATTGCAGTGATTCAACATGGGAGGGTGGTCGAAATCGGAAGCCATAACCAGCTTATTGGAAAACCTTCTGGTGTTTATAAACAAC TAGTCAGTTTACAGCAAGAAAAGTCATTTTCCTATCAATAA
AA sequence Show only first row Show all	>Potri.002G019600.1 pacid=42777584 polypeptide=Potri.002G019600.1.p locus=Potri.002G019600 ID=Potri.002G019600.1.v4.1 annot-version=v4.1 MEELELTSDQVLDQNSLPKMERPSNSSKKPTVSIFGLFSAADKFDHFLMFLGLVGSCAHGAVFPLFFVLFGHLIDSLGHVRSDPHQMSSQVSKYSLDLVY LGLGVFVAGWIGVASWMQTGERQTARLRLKYLQSVLRKDMNFFDIEARDSNILFHISSDAILVQDAIGDKTGHAVRYLSQFFIGFVFGFKSVWQLTLLTL AVVPLMAVAGGAYTIIMSTLSEKGEAAYAEAGKVADEAISQIRTVYSFVGEEKALEEYSKSLKKALKLGKKSGVAKGVGIGSTYGLLFCAWSMLLWYSSI LVRRGDTNGAKAFTVILNVIFSGFALGQAAPNIAAISKGRAAAASIMSMIETDSSPSKNLVDGIVMPKVSGQIEFCEVCFSYPSRSNMVFENLSFSISAG KNFAVVGPSGSGKSTVISMVQRFYEPTSGKILLDGHDLKTLELKWLREQMGLVSQEPALFATTIAGNILFGKEDASMDQIYEAAKAANVHSFVLQLPDGY HTQVGEGGTQLSGGQKQRLAIARAVLRNPKILLLDEATSALDAESELIVQQALEKIMANRTTIVVAHRLSTIRDVDTIIVLKNGLVVESGSHLELISKGG EYASMASLQVSEHVTDASSIHSGTAGKSSFRELTSSQNQEVTTRELKSNDENLSPANFSPTPSIWELVKLNAPEWPYAVLGSVGAMMAGMEAPLFALGIT HMLTAFYSPDNSQMKKEVHLVALIFVGAAVVTVPIYILQHYFYTLMGERLITRVRLSMFSAILCNEIGWFDLDENSTGSLTSTLAADATLVRSTLADRLS TMVQNVSLTVTAFVIGFSLSWRVSAVIIACFPLLIGAAITEQLFLKGFGGDYRSYTRANAVAREAIANIRTVASFGAEERIAHQFASELNKPNKQVLLQG HISGIGYGASQFFCFCAYALGIWYASVVISHNESDFDHVMKSFMVLVMTSYAIAETVALTPDIMKGSQALESVFSILHRKTAMDPDDPTSKVITDIKGDV ELRHVSFKYPARPDTIIFEDLNLKVSAGKSLAVVGQSGSGKSTVIALILRFYDPISGTVLIDGYDVKTLNLKSLRRKIGLVQQEPALFSTTIYENIKYGN KNASEIEVMKAAKAANAHGFISRMHEGYHTHVGDRGLQLSGGQKQRIAIARAILKDPSILLLDEATSALDTASEKLVQEALDKLMEGRTTVLVAHRLSTV RDADSIAVIQHGRVVEIGSHNQLIGKPSGVYKQLVSLQQEKSFSYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Potri.002G019600 [exp]	0	1
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.010G125300 [exp]	4.69	0.9960	CUT1.1
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.008G120300 [exp]	6.78	0.9955
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Potri.019G075201 [exp]	7.74	0.9954
AT1G02260			Divalent ion symporter (.1)		Potri.012G144000 [exp]	8.94	0.9954
					Potri.017G047500 [exp]	12.04	0.9953
AT4G23400		PIP1D, PIP1;5	plasma membrane intrinsic prot...		Potri.009G128500 [exp]	13.41	0.9950
AT2G45180			Bifunctional inhibitor/lipid-t...		Potri.018G025900 [exp]	13.56	0.9949
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.019G024600 [exp]	16.73	0.9949
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Potri.010G052500 [exp]	17.05	0.9106
AT3G43720			Bifunctional inhibitor/lipid-t...		Potri.004G196000 [exp]	17.60	0.9910

Compare expression of checked genes

Potri.002G019600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.