Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20080 846 / 0 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 825 / 0 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT5G04220 565 / 0 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21010 343 / 6e-116 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 255 / 6e-78 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 238 / 2e-71 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 211 / 2e-61 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21040 133 / 3e-35 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 104 / 2e-23 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 98 / 2e-21 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241700 [exp] 970 / 0 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G134200 [exp] 911 / 0 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 900 / 0 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.008G038300 [exp] 653 / 0 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 652 / 0 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.018G124000 [exp] 248 / 4e-75 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 246 / 2e-74 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 231 / 7e-69 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 192 / 1e-54 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017268 [exp] 910 / 0 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013563 [exp] 901 / 0 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019782 [exp] 853 / 0 AT2G20990 825 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10014127 [exp] 838 / 0 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10005069 [exp] 795 / 0 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10027842 [exp] 725 / 0 AT2G20990 695 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10037993 [exp] 614 / 0 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 609 / 0 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 581 / 0 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 533 / 0 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0648 [poplar] [flax] Aha1_BPI PF17047 [poplar] [flax] SMP_LBD Synaptotagmin-like mitochondrial-lipid-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G019800.2 pacid=42778827 polypeptide=Potri.002G019800.2.p locus=Potri.002G019800 ID=Potri.002G019800.2.v4.1 annot-version=v4.1 ATGGGAATTCTGAGTAGTATATTGGGATTCTGTGGATTTGGAATAGGAACATCAATTGGGATTGTAATTGGCTACTATATGTTCATCTATTTTCAGCCAA CTGATGTTAAGGATCCTGTACTCCGTCCTTTGATTGAACAAGACTCAAAAACTTTGCTACGTTTGCTTCCAGAAATACCCCAGTGGGTGAAGAATCCAGA TTATGATCGGGTTGACTGGCTTAACAAATTGATTGAGAACATGTGGCCTTACATAAATACGGCAATTTGCAAGACTGCAAGGAATATAGCAAAGCCCATT ATTGCTGAGCAAATTCCAAAATACAAAATTGACTCTGTTGAATTTGAAACACTTACCTTGGGCTCCCTGCCACCAAATTTTCCAGGAATGAAAGTTTATG TCACTGATGAGAAAGAGCTGATCATGGAACCAGTATTGAAGTGGGCTGGGAATCCAGATATAACTATTGCGGTTAAAGCATTTGGTCTGAAAGCCACAGT TCAGGTGGTTGATTTGCAAGTATTTGCTGCTCCTCGTATCACCCTAAAGCCTTTGCTTCCAGTATTTCCTTGTTTTGCCAATATATATGTGTCTCTGCTA GAGAAGCCACATGTTGACTTTGGATTGAAATTGCTTGGAGCAGATGCTATGTCCATTCCCGGCCTGTACAAATTTGTCCAGGAGCTTATCAAAGATCAGG TTGCAAATATGTATTTATGGCCAAAATGCCTGGTAGTACCAATCATGGATCCTTCAAAAGCCATGAAGCGACCTGTTGGGATACTCACTGTGAAGGTTCT GAGGGCAATGAAGCTTAAAAAGAAAGATCTGTTAGGGGCATCAGACCCATATGTGAAATTAAAGCTTACCGAAGATAAGCATCATTCAAATAAAACAACT GTTAAACACAAAAACTTGAACCCTGAATGGAATGAGGAGTTCAATATCACTGTTAAAGACCCGGAATCTCAAGCCTTGGAGGTTCTTGTCTATGATTGGG AACAGGTTGGCAAACATGACAAGATGGGTATGAATGTCATTCCACTGAAAGAGCTGACTCCTGATGAACCAAAAGTTCTTACTCTTGATCTGCTAAAAAA TATGGACCCAAATGATGTTCAAAATGAGAAATCACGCGGACAGATTGTTGTTGAATTGGTATACAAACCTTTTAAGGAAGATGAGATACCAAAAGATATC GATGATCCAAATGCGGTGGCAAAAGCTCCTGAAGGTACACCTGCTGGTGGTGGTCTGTTTGTAGTTATTGTGCACGAAGCTCAAGATGTGGAAGGAAAAC ACCACACAAATCCTTACGCTCGATTACTTTTCAAAGGGGAGGAGAAAAGAACTAAGCAAGTGAAGAAAAGCAGAGATCCGAGATGGGAAGAAGAGTTTCA GTTCGTGCTGGAGGAAGCACCCACGAATGAAAGACTTCATGTGGAAGTTGTTAGCTCCTCCTCAAGGATGGGTCTATTGCATCCTAAGGAAAACCTGGGT TATGTGGTGATAAACCTAGCAGATGTCGTAAACAACAAGAGAATCAACGAGAAGTACCATCTCATTGACTCCAAGAATGGCCGAATCCAAGTTGAGCTGC AATGGAGAACATCTTAA
AA sequence Show only first row Show all	>Potri.002G019800.2 pacid=42778827 polypeptide=Potri.002G019800.2.p locus=Potri.002G019800 ID=Potri.002G019800.2.v4.1 annot-version=v4.1 MGILSSILGFCGFGIGTSIGIVIGYYMFIYFQPTDVKDPVLRPLIEQDSKTLLRLLPEIPQWVKNPDYDRVDWLNKLIENMWPYINTAICKTARNIAKPI IAEQIPKYKIDSVEFETLTLGSLPPNFPGMKVYVTDEKELIMEPVLKWAGNPDITIAVKAFGLKATVQVVDLQVFAAPRITLKPLLPVFPCFANIYVSLL EKPHVDFGLKLLGADAMSIPGLYKFVQELIKDQVANMYLWPKCLVVPIMDPSKAMKRPVGILTVKVLRAMKLKKKDLLGASDPYVKLKLTEDKHHSNKTT VKHKNLNPEWNEEFNITVKDPESQALEVLVYDWEQVGKHDKMGMNVIPLKELTPDEPKVLTLDLLKNMDPNDVQNEKSRGQIVVELVYKPFKEDEIPKDI DDPNAVAKAPEGTPAGGGLFVVIVHEAQDVEGKHHTNPYARLLFKGEEKRTKQVKKSRDPRWEEEFQFVLEEAPTNERLHVEVVSSSSRMGLLHPKENLG YVVINLADVVNNKRINEKYHLIDSKNGRIQVELQWRTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.002G019800 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.018G152600 [exp]	1.00	0.9660
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.011G044300 [exp]	3.16	0.9328	GAL1.6
AT5G16110			unknown protein		Potri.005G108633 [exp]	4.12	0.9244
AT3G57030			Calcium-dependent phosphotries...		Potri.008G109966 [exp]	4.47	0.9498
					Potri.002G138100 [exp]	4.69	0.9328
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	5.47	0.9497
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.004G216500 [exp]	6.24	0.9528
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	7.54	0.9201
AT4G18830	OFP	ATOFP5, OFP5	ovate family protein 5 (.1)		Potri.015G004300 [exp]	8.36	0.9452
					Potri.016G139350 [exp]	9.79	0.9442

Compare expression of checked genes

Potri.002G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.