Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CLV1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75820 1225 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 969 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 952 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 868 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 643 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 607 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 593 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 592 / 0 HSL1 HAESA-like 1 (.1) AT5G65710 534 / 2e-174 HSL2 HAESA-like 2 (.1) AT1G09970 532 / 8e-174 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241500 [exp] 1578 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 950 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 893 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 878 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 832 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G107600 [exp] 655 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 639 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G256500 [exp] 635 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G021700 [exp] 631 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013562 [exp] 1273 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 1271 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 950 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 944 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 902 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 842 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 811 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10035783 [exp] 706 / 0 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10027221 [exp] 627 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10038930 [exp] 620 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G019900.1 pacid=42779807 polypeptide=Potri.002G019900.1.p locus=Potri.002G019900 ID=Potri.002G019900.1.v4.1 annot-version=v4.1 ATGGGAACTCTTCTGTGTTTTCTTCTTCCTTTTCTTGTACTACTGTTCACTGCTTGCAGTGGATACAGTGAACTTGAAGTCCTCTTGAAGCTGAAATCTT CCATGTACGGACATAATGGCACTGGCCTTGAAGATTGGGTGGCTTCTCCTACATCTCCTTCAGCTCATTGTTTCTTCTCTGGAGTCACGTGTGATGAGAG CTCACGTGTGGTGTCACTTAATTTGTCGTTCAGACATCTTCCTGGTTCAATTCCTCCAGAGATTGGGTTGTTGAACAAGCTTGTGAATCTTACTTTGGCC AATGATAATCTCACGGGGGAACTTCCTGCGGAGATAGCCATGCTTAAATCTCTCAGGATTTTGAACATTTCTGGCAATGCTATTGGTGGGAATTTCTCTG GAAAGATCACTCCTGGCATGACACAGCTTGAGGTTCTTGATATTTACAACAATAATTGCTCGGGTCCACTGCCAATTGAAATTGCAAACCTGAAAAAACT CAAGCATCTTCACCTGGGAGGGAATTTCTTTTCTGGTAAAATACCAGAGGAGTACTCGGAGATTATGAGCTTGGAGTTCTTAGGCTTGAATGGTAATGAC CTTTCAGGCAAAGTTCCTTCTAGCTTGTCTAAGCTGAAGAATCTCAAGAGCTTGTGCATTGGGTACTATAACCATTACGAAGGAGGTATTCCACCTGAAT TTGGATCATTGAGTAATCTTGAACTTCTTGACATGGGTTCTTGCAACCTTAATGGTGAGATTCCTTCTACTCTAGGCCAATTAACCCATCTGCATTCGCT GTTTCTTCAATTCAATAATCTCACTGGATATATCCCTTCGGAATTATCTGGTCTAATTAGCTTGAAATCACTTGATCTTTCAATCAACAACCTCACTGGG GAGATACCCGAGAGTTTTTCAGCTTTGAAAAACTTAACACTCCTCAATCTCTTTCAAAACAAGCTGCACGGTCCAATCCCAGACTTTGTTGGTGATTTTC CAAACCTTGAGGTGCTTCAGGTTTGGGGAAACAACTTCACATTTGAGCTTCCCAAACAGCTCGGCCGGAATGGGAAGCTGATGTATCTGGACGTGTCATA TAATCACTTGACAGGATTGGTTCCTCGGGACTTATGCAAGGGAGGGAAATTGAAGACGTTGATTCTCATGAATAATTTCTTCATTGGATCACTTCCTGAA GAAATTGGCCAGTGCAAGTCCTTGCTCAAAATCAGAATCATTTGTAATCTCTTTACAGGCACTATCCCTGCTGGGATCTTTAATTTACCTTTGGTGACCC AAATTGAGTTGAGCCATAACTATTTCTCCGGCGAGCTTCCACCGGAGATTTCAGGAGATGCACTAGGCTCTCTTTCGGTCTCTGACAATCGGATTACTGG TAGAATCCCCCGGGCTATTGGGAATTTGAAGAGTTTGCAGTTTCTATCTCTGGAAATGAACAGACTTTCTGGTGAAATTCCTGATGAAATCTTCAGTCTG GAGATCCTCTCCAAGATCAGCATCCGTGCCAACAACATTAGCGGTGAAATCCCAGCTTCCATGTTCCATTGCACTTCACTTACATCCGTTGATTTCAGTC AAAACAGCATCAGTGGGGAGATTCCAAAGGAGATTACTAAACTGAAGGATTTGAGTATTCTTGATCTCTCTCGAAATCAGCTTACTGGTCAACTACCAAG TGAAATTCGATACATGACAAGTCTTACAACTCTAAACCTCTCCTACAACAATTTATTTGGCCGGATCCCTTCTGTCGGCCAATTCCTGGCGTTCAATGAC AGCTCATTTCTTGGAAATCCAAATCTCTGTGTAGCAAGAAATGACTCTTGCTCATTTGGTGGTCATGGCCATAGAAGGTCCTTTAATACTTCAAAGCTAA TGATCACTGTCATTGCTCTTGTCACTGCGTTGCTGTTAATAGCAGTGACAGTTTACAGATTGAGAAAGAAGAATCTGCAGAAATCACGGGCCTGGAAGCT CACTGCATTCCAAAGGCTCGATTTCAAAGCAGAGGATGTGCTCGAGTGCTTGAAAGAGGAAAACATTATAGGCAAAGGTGGCGCTGGGATTGTCTACCGT GGGTCAATGCCAGAGGGTATTGATCATGTAGCTATCAAACGACTTGTTGGTAGAGGCACCGGACGAAACGATCATGGCTTCTCAGCCGAGATCCAAACAC TTGGAAGGATCAGGCACCGAAATATTGTTAGGCTGCTGGGGTACGTATCAAATAAGGATACCAACTTGCTGTTGTATGAGTACATGCCAAATGGGAGCTT AGGAGAGCTTTTGCATGGTTCAAAGGGAGGCCATTTGCAGTGGGAAACCAGGTACAGAATTGCTGTGGAGGCTGCCAAGGGACTCTGTTATCTTCACCAT GATTGCTCTCCTTTGATTATACATAGGGATGTGAAGTCCAATAACATATTACTTGATTCGGATTTTGAGGCTCATGTTGCTGATTTTGGGCTGGCCAAGT TCTTGCAAGATGCAGGTGCATCAGAATGCATGTCCTCTATTGCTGGCTCCTATGGTTACATTGCTCCAGAATACGCTTACACATTGAAAGTGGACGAAAA AAGTGATGTTTACAGCTGCGGTGTTGTGCTGCTGGAGCTGATAGCAGGGAGGAAGCCAGTAGGGGAGTTTGGAGATGGGGTGGACATAGTGAGATGGGTC AGGAAGACCACGTCAGAACTATCTCAGCCATCCGATGCAGCTTCAGTCTTGGCAGTTGTGGACCCCAGGCTTAGTGGGTACCCTCTAACAGGTGCCATTC ACCTGTTTAAGATAGCTATGTTGTGTGTAAAAGATGAGAGCTCGAACCGGCCTACCATGAGGGAAGTGGTTCACATGCTCACCAATCCTCCACAGTCAGC CTCAAGCCTCCTCACCCTCTAG
AA sequence Show only first row Show all	>Potri.002G019900.1 pacid=42779807 polypeptide=Potri.002G019900.1.p locus=Potri.002G019900 ID=Potri.002G019900.1.v4.1 annot-version=v4.1 MGTLLCFLLPFLVLLFTACSGYSELEVLLKLKSSMYGHNGTGLEDWVASPTSPSAHCFFSGVTCDESSRVVSLNLSFRHLPGSIPPEIGLLNKLVNLTLA NDNLTGELPAEIAMLKSLRILNISGNAIGGNFSGKITPGMTQLEVLDIYNNNCSGPLPIEIANLKKLKHLHLGGNFFSGKIPEEYSEIMSLEFLGLNGND LSGKVPSSLSKLKNLKSLCIGYYNHYEGGIPPEFGSLSNLELLDMGSCNLNGEIPSTLGQLTHLHSLFLQFNNLTGYIPSELSGLISLKSLDLSINNLTG EIPESFSALKNLTLLNLFQNKLHGPIPDFVGDFPNLEVLQVWGNNFTFELPKQLGRNGKLMYLDVSYNHLTGLVPRDLCKGGKLKTLILMNNFFIGSLPE EIGQCKSLLKIRIICNLFTGTIPAGIFNLPLVTQIELSHNYFSGELPPEISGDALGSLSVSDNRITGRIPRAIGNLKSLQFLSLEMNRLSGEIPDEIFSL EILSKISIRANNISGEIPASMFHCTSLTSVDFSQNSISGEIPKEITKLKDLSILDLSRNQLTGQLPSEIRYMTSLTTLNLSYNNLFGRIPSVGQFLAFND SSFLGNPNLCVARNDSCSFGGHGHRRSFNTSKLMITVIALVTALLLIAVTVYRLRKKNLQKSRAWKLTAFQRLDFKAEDVLECLKEENIIGKGGAGIVYR GSMPEGIDHVAIKRLVGRGTGRNDHGFSAEIQTLGRIRHRNIVRLLGYVSNKDTNLLLYEYMPNGSLGELLHGSKGGHLQWETRYRIAVEAAKGLCYLHH DCSPLIIHRDVKSNNILLDSDFEAHVADFGLAKFLQDAGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSCGVVLLELIAGRKPVGEFGDGVDIVRWV RKTTSELSQPSDAASVLAVVDPRLSGYPLTGAIHLFKIAMLCVKDESSNRPTMREVVHMLTNPPQSASSLLTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.002G019900 [exp]	0	1	Pt-CLV1.1
AT2G47630			alpha/beta-Hydrolases superfam...		Potri.002G204200 [exp]	1.41	0.9760
					Potri.017G142923 [exp]	2.23	0.9594
AT1G04500			CCT motif family protein (.1)		Potri.008G171500 [exp]	2.44	0.9636
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Potri.002G005800 [exp]	3.31	0.9518
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.002G035200 [exp]	3.46	0.9606
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Potri.012G117500 [exp]	4.24	0.9590
AT5G20635		AGG3	Arabidopsis G protein gamma su...		Potri.006G141100 [exp]	5.91	0.9571
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.019G128200 [exp]	6.92	0.9543
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.001G098000 [exp]	9.48	0.9207
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	9.48	0.9543

Compare expression of checked genes

Potri.002G019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.