Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24200 253 / 3e-70 Transcription elongation factor (TFIIS) family protein (.1) AT3G48060 73 / 1e-12 BAH domain ;TFIIS helical bundle-like domain (.1) AT3G48050 72 / 1e-12 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241400 [exp] 1494 / 0 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Potri.012G077700 [exp] 76 / 9e-14 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 72 / 2e-12 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072800 [exp] 72 / 3e-12 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072900 [exp] 70 / 9e-12 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009128 [exp] 711 / 0 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10028515 [exp] 709 / 0 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10017630 [exp] 556 / 0 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10033586 [exp] 241 / 3e-66 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10042137 [exp] 75 / 3e-13 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10033410 [exp] 70 / 9e-12 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [poplar] [flax] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G020000.3 pacid=42779503 polypeptide=Potri.002G020000.3.p locus=Potri.002G020000 ID=Potri.002G020000.3.v4.1 annot-version=v4.1 ATGACACTTGAAGATTTCTTTACCCTGACTGAGATGAAGGATGGGCTCACAGCCCCTTCACGAGTCCATGAGTTGGTTGCTGTAATGCAGAAAGAGAAAC ATGGTGTTTTGAATAATGTTGGAGATTCAACCAGGCAATGGGCTGCTGTTGCAAGCACAATTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTGT TAACTTAAATGGACTATTGTTTATTGATAGATGGTTAACGATTGCTCAGAAGTTCAGTAATGAAACAAATGAAGGCTCTGTAGAAGAGTCAATTACTGCA TTATTAAGGGCTCTGGAAAAGCTGCAAATAGACAAGGAGAGGTCCATTTCTTCAGGGGTCTGGGGCACTGTCAATAATCTTCTTGACCACAGTAGTTCTC GGGTTCAGGATAGGGCAAGGGCATTGTTTGATAGCTGGAAGCCTGGTGAGGTTAGTGATGCAATTCACCATGATGTTCAGAGTGTTGGGGCATTTGATGA CGTTAGAATGAATGACAGTGAGACTGGAAAAACTGAATGTGTTGCTGTCAAAGTTCCTCTTTCAAATGGAAGTGCTGATGTAGAAAATAACGCTGCAGAA CGAACTGGGGATGAAAGTTTGCAATCAAGAAACTCAAATTGTCTTCAAGCAGAAAGCGTGCAGGATGTACAGATCCAAACTAATGATTGTGATCATCAAA TTTTAGACCATAGAAATTTGGAGGATAGAACGCAAGTTCCTCTTACTGCTGCTGTGGATAGATCATTAGATCCTCTTAACACCTCTGTTGTGTCAAAATC TGATCAAGAAAGCCTGTCACTGAAAGAAAAGTCCCCAGTAAGTAGTGCTGTGGAAGAGAATGTTTCCACTGAGCCAGATTCAGAAGCTCCAAAGATGCTC ACTGACAAATCAGCCTCTTCTAGCAAAGTGGAACCTGGAGCTATTTCCTCTAGCAATGTTGCTGCAATTGCTGAGGAAATTGTGTCAGAATCTGCTTTGC AAAATAATGTTGATGCCAAAGAGGATAATTGCTGTACAAGTACAAGTGGATCCAGTGTTGTGGCAATACCCGTATCTACATCAAAAATTGGGACAGATGA AGCGGAGAATAGAGATCAATGTCAAACACCTATATTTAACTCCGGTGCTGAAGATGGTGAATTTTCTCCCGACCCTCCACAGCACTTGGCTGGCAACAAG AGCCCATTGGAAAAACCTGACAAGTTTGGGAGTCTATTTTCACGGATGGAAGATGTTGGTGCTAGTGATGATGATAGAGAACATAGCAGTGACGGGGCTG AGGATAATTCTGATTTCTCTAAACCAACCACAGATAAATGTAGTCCGGATTTGATTGGCAGAAGAAGATCTGATATTGAGCTTGAGTATGGCATGGTTGA TGCTCTTGAAGTTGCTCGACAAGTTGCTCAAGAAGTGGAGAGAGAAGTTGGAGATTACAGAGAACAATCCTGCAGCTCGTCTTCTGAGAAAATCTTGGAA AGTGGTATTAAGCAGCCAGGTAGCCCAGATTCCATAAATGGAGAGCGGGACCTATCCACTGAGATCCCTCCGGAAAATGTGCCAACTAGACTGAATCAGT CTTCTGAGACGTGTGCTGAGCAAGAGGGGCGCTTAATTGATTCAAGTAATCTGGAAAACGAAGCAGAGAATGGCATGCATGACCTGGAGTCTTCTCTGGT CACTGAAGTGGCTCAAGAACCAGAAATTAATACAGAGAAAGGCCTGTGTGATTTTGATTTGAATGAAGAAGGCTGTTCCGATGATATGGTTCTTCCTATG AATACATCCCCCGCCCTGATTTCCATTGTTTCGGCTTCAAGGCCTGCAGCAGCTTCTGGATCGCCTGCAGCTCCTTTGCAGTTCGAGGGAAATCTTGGAT GGAGAGGTTCTGCAGCTACTAGTGCTTTTCGTCCAGCTTCCCCACGCAAGACTTCTGACGGGGACAAGACTGTTGAGACTGTTGAGGCTGGGGGAAGCAG CAATTGTTCAAAACAAAGGCAGGTGTGCCTTGATATTGATCTCAATGTGGCCGAGGGTGGAGAGGAGAAGGTCGTGGATTTAATTTCATCAAGACAAATT CCAGTCTCATCAGGCTTCCATTCTGGGGAATCTTCTTTAGAAGTGGGCTCGAGAAGACCAGAGAGGCCCAACCTGGATTTAAATCGTACCAGTGATGATG GTGATGCTTCACTGACTGATCTGAGAATGGAGGGACAGCTATTTTACCCATGGAACGGCCATCGTAGTCCATCTCCTGCTTCTTCATCTTCTTCAATGCA GCCTTCTCTGAGGAACTTTGATTTAAATGATAGACCTTTCTTTCATAATGACTCTTTGGATCACGGGCTGTATCATAGCAAGTCCTCTCAAACTGCAAGT GTTTTTGGAGGATCTAAACTAGGTGATCCTGTTATTTCTATCATGGGTACTAGAGTGGAAGTGGGCAATCGAACGGAAGTTGACAAAAAAGATTTCATTC CGCAGGCTCCGTCCCTGCCAAACAGCAAGCCTCTGGAACCTGTAATGGGTGCTAATCTTGCAAGAATGGGAGGTGTTTTGGGTATGGTTCCCGCTCTGCC ATACACTCATGCTCCTGTTTTTGGGTACAGTGCATTGCCAACAGCACCTGCCATATCCATTCCTTCAGCTATGTATGGTTCTGCTGGCTCCATCCCTTAT ATGATGGATTCAAGGGGAACTCCTGTCATGCCTCAAATAATGGGCTCTGCACCATCTGTTCCTCCTTACTCCCAGCAACCATTCATAATGAGTATGAGTG GTGCACCCCTGAGTTTAAATGGTGCTGGGCCCTCACGGCCTAGCTTTGACTTAAATTCTGGTTTTGCAATGGATGGGGGAAGCACGGGTGGTTTGCGCCA GCTGTTCATGCCTGGCCAAGGCAGCTCACAACCTTCTTCAAGCTCTGGAGTGGGTGGGAAAAGGAAGGAACCAGATAGTGGGTGGGAACCTGCCTACTCT TTACAATATAAGCATCCGCAACCCCCATGGAGATAG
AA sequence Show only first row Show all	>Potri.002G020000.3 pacid=42779503 polypeptide=Potri.002G020000.3.p locus=Potri.002G020000 ID=Potri.002G020000.3.v4.1 annot-version=v4.1 MTLEDFFTLTEMKDGLTAPSRVHELVAVMQKEKHGVLNNVGDSTRQWAAVASTIAATENKDCLDLFVNLNGLLFIDRWLTIAQKFSNETNEGSVEESITA LLRALEKLQIDKERSISSGVWGTVNNLLDHSSSRVQDRARALFDSWKPGEVSDAIHHDVQSVGAFDDVRMNDSETGKTECVAVKVPLSNGSADVENNAAE RTGDESLQSRNSNCLQAESVQDVQIQTNDCDHQILDHRNLEDRTQVPLTAAVDRSLDPLNTSVVSKSDQESLSLKEKSPVSSAVEENVSTEPDSEAPKML TDKSASSSKVEPGAISSSNVAAIAEEIVSESALQNNVDAKEDNCCTSTSGSSVVAIPVSTSKIGTDEAENRDQCQTPIFNSGAEDGEFSPDPPQHLAGNK SPLEKPDKFGSLFSRMEDVGASDDDREHSSDGAEDNSDFSKPTTDKCSPDLIGRRRSDIELEYGMVDALEVARQVAQEVEREVGDYREQSCSSSSEKILE SGIKQPGSPDSINGERDLSTEIPPENVPTRLNQSSETCAEQEGRLIDSSNLENEAENGMHDLESSLVTEVAQEPEINTEKGLCDFDLNEEGCSDDMVLPM NTSPALISIVSASRPAAASGSPAAPLQFEGNLGWRGSAATSAFRPASPRKTSDGDKTVETVEAGGSSNCSKQRQVCLDIDLNVAEGGEEKVVDLISSRQI PVSSGFHSGESSLEVGSRRPERPNLDLNRTSDDGDASLTDLRMEGQLFYPWNGHRSPSPASSSSSMQPSLRNFDLNDRPFFHNDSLDHGLYHSKSSQTAS VFGGSKLGDPVISIMGTRVEVGNRTEVDKKDFIPQAPSLPNSKPLEPVMGANLARMGGVLGMVPALPYTHAPVFGYSALPTAPAISIPSAMYGSAGSIPY MMDSRGTPVMPQIMGSAPSVPPYSQQPFIMSMSGAPLSLNGAGPSRPSFDLNSGFAMDGGSTGGLRQLFMPGQGSSQPSSSSGVGGKRKEPDSGWEPAYS LQYKHPQPPWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24200			Transcription elongation facto...		Potri.002G020000 [exp]	0	1
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077500 [exp]	3.00	0.8719
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	3.16	0.8699
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.006G201100 [exp]	4.00	0.8526
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072800 [exp]	4.24	0.8632
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.012G136100 [exp]	10.90	0.8261
AT1G79090			unknown protein		Potri.001G457800 [exp]	15.19	0.8185
AT1G06230		GTE4	global transcription factor gr...		Potri.019G090700 [exp]	15.32	0.8438
AT3G54460			SNF2 domain-containing protein...		Potri.003G197701 [exp]	15.65	0.7700
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G019100 [exp]	24.10	0.7562
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	24.24	0.8273

Compare expression of checked genes

Potri.002G020000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.