Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38660 357 / 3e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 353 / 3e-123 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G75800 295 / 2e-99 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 295 / 3e-99 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36010 288 / 5e-97 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 280 / 3e-94 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38670 272 / 7e-91 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G19320 261 / 4e-87 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 257 / 2e-85 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 257 / 2e-85 ATLP-3 thaumatin-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241000 [exp] 544 / 0 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.005G112600 [exp] 359 / 2e-124 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 348 / 9e-120 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 345 / 1e-118 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112700 [exp] 302 / 1e-102 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020500 [exp] 298 / 1e-100 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 296 / 7e-100 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.009G132200 [exp] 277 / 2e-92 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.012G004800 [exp] 253 / 1e-82 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013561 [exp] 411 / 5e-145 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 390 / 2e-136 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10028447 [exp] 347 / 1e-119 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 347 / 2e-119 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 327 / 2e-112 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 292 / 1e-98 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 286 / 4e-96 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017265 [exp] 281 / 1e-93 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 278 / 2e-92 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 276 / 6e-92 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.002G020400.1 pacid=42777246 polypeptide=Potri.002G020400.1.p locus=Potri.002G020400 ID=Potri.002G020400.1.v4.1 annot-version=v4.1 ATGGATCGCATCTTCACCAGTTCTGCTCTTCACATCACTCTCATTTTGCTCACAATCTGCAAAGGGCTATCAGGGGCTACATTTACATTCATAAACAGAT GTGGCTACACAGTGTGGCCAGGCATTCTATCCAATGCAGGCAGCACTCCATTGGAAAGCACAGGATTTGAACTTCCACAAGGTGGATCACGATCCTTCCA GGCACCTCCAAATTGGTCAGGTCGGTTCTGGGGCAGAACGGGTTGCACATTTGACCCAAATACCGGTCAGGGTACCTGCCTAACAGGTGATTGCAGCTCA AACCAAATTGAATGCAATGGTAAAAATGCAAACCCACCAGCCACTCTAGCAGAATTCACAGTCGGATCAGGTGTACTGGATTTTTACGATGTTAGTTTAG TTGACGGATACAATCTACCCATGATCGTCGAACCGAATGGCGGGTCAGGTAGTTGCTTGTCGACCGGGTGTGTAACAGATATGAACCAGCAATGCCCAAC TGAATTACGGGCCGATTCAGGGCAGGCCTGTAAGAGTGCATGTGAAGCCTTTGGGAGTCCAGAGTACTGTTGCAGCGGCGCGTATGGATCACCGGACACA TGTAAGCCGTCGGTTTATTCAGAGATGTTTAAGGCCGCGTGTCCGAGATCATATAGCTATGCTTATGATGATGCCACTAGCACATTTACATGTACAGGAG CAGATTATGTTATCACATTCTGCCCTTCATTAACAAGTCAAAAATCTGCAAGAGGCAATTCTCCACCAGCAAGCACAACAAATGGGTCTGAGACAGTATC GGGCGATGGGCCAGTAGGAATGGACACTTCATGGCTGCCAAACTTTCTCAGTGGGGACTCGCCAAATGCCCTATCTTGTTCTGTTTGGCAATTTACCTTG ATTCTTTCTACAATTTCCTGTCTTCTCCTCTCTTTGGTTCATTAA
AA sequence Show only first row Show all	>Potri.002G020400.1 pacid=42777246 polypeptide=Potri.002G020400.1.p locus=Potri.002G020400 ID=Potri.002G020400.1.v4.1 annot-version=v4.1 MDRIFTSSALHITLILLTICKGLSGATFTFINRCGYTVWPGILSNAGSTPLESTGFELPQGGSRSFQAPPNWSGRFWGRTGCTFDPNTGQGTCLTGDCSS NQIECNGKNANPPATLAEFTVGSGVLDFYDVSLVDGYNLPMIVEPNGGSGSCLSTGCVTDMNQQCPTELRADSGQACKSACEAFGSPEYCCSGAYGSPDT CKPSVYSEMFKAACPRSYSYAYDDATSTFTCTGADYVITFCPSLTSQKSARGNSPPASTTNGSETVSGDGPVGMDTSWLPNFLSGDSPNALSCSVWQFTL ILSTISCLLLSLVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38660			Pathogenesis-related thaumatin...		Potri.002G020400 [exp]	0	1
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	3.31	0.9358
AT2G28410			unknown protein		Potri.004G211000 [exp]	3.60	0.9110
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	4.47	0.9331
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.006G096900 [exp]	4.47	0.9128	LAC1c,Pt-LAC2.3
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187600 [exp]	9.21	0.9040
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	10.24	0.9226
AT2G45040			Matrixin family protein (.1)		Potri.014G058200 [exp]	10.90	0.9165
AT3G52930			Aldolase superfamily protein (...		Potri.018G090100 [exp]	13.26	0.9164
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.006G097000 [exp]	14.69	0.8688	Pt-LAC2.2
AT5G43100			Eukaryotic aspartyl protease f...		Potri.005G144600 [exp]	16.73	0.9214

Compare expression of checked genes

Potri.002G020400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.