Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75800 404 / 4e-142 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 388 / 6e-136 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36010 337 / 4e-116 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38670 327 / 3e-112 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT2G17860 305 / 2e-104 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 305 / 7e-103 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G38280 300 / 5e-97 PR5K PR5-like receptor kinase (.1) AT4G24180 284 / 6e-96 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G19320 266 / 5e-89 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 258 / 1e-83 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240900 [exp] 564 / 0 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 374 / 1e-130 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G014574 [exp] 361 / 3e-126 AT1G75800 294 / 8e-100 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G014700 [exp] 350 / 2e-116 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.009G132200 [exp] 338 / 4e-116 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.004G014512 [exp] 347 / 2e-115 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.011G003900 [exp] 328 / 7e-108 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.005G241000 [exp] 301 / 2e-101 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.002G020400 [exp] 298 / 1e-100 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017265 [exp] 429 / 6e-152 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 412 / 3e-145 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 407 / 3e-143 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 330 / 2e-113 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 313 / 1e-106 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 299 / 6e-101 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10013561 [exp] 298 / 3e-100 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 284 / 2e-94 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 282 / 4e-94 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10023897 [exp] 273 / 7e-92 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.002G020500.1 pacid=42777828 polypeptide=Potri.002G020500.1.p locus=Potri.002G020500 ID=Potri.002G020500.1.v4.1 annot-version=v4.1 ATGTCTCAACGAACTTTACTTATCCCTTTATCATCCTTCTTCATTGCCCATTTACTCATTTCGGGTGTTGTTTCAACAACTTTTACATTAACAAATAAGT GTGGCTACACAGTATGGCCAGGCATTCTGTCCAACGCAGACGCACCAGCTCTTTCCACGACTGGTTTTTCCCTCCAAAAGGGGGAGTCAAAAACCATTAC AGCACCAGCTTCATGGGGTGGACGTTTATGGGGCCGCACATATTGCTCTCAAGACTCCACAGGAAAATTCTCTTGCCTAACAGGGGATTGTGGCTCTGGA AAACTAGAATGTTCAGGCACTGGTGCAGCTCCTCCGGCTACGTTAGCAGAGTTCAAGATTGACGGCTATGGAGGGATGGATTATTTTGATGTCAGCCTTG TAGATGGGTACAACTTGCCATTGCTTGTTGTCCCCCAGGGCGGTTCTGGTCAGAATTGTACAAGCACTGGATGCGTGGTGGATTTGAATGGCGCGTGTCC TTCGGAGCTTAAGGTTACTAGCACGGGAGGCGAGAGCGTGGCATGTAAGAGCGCTTGTGAAGCGTTTAGGTCACCACAGTATTGTTGTAGCGGTGCATAT GGTACACCCGATACTTGCAAGCCTTCTTCGTATTCCGAGATATTTAAGAACGCCTGTCCACGCGCTTACAGCTACGCTTACGATGATAAGACTAGTACCT TCACTTGTGCCTCCGCCGATTACCAAATTACCTTCTGCCCCGCGCCTAACACCAGCCAAAAAGCGTCACAGGAGCAGAACTCTGAGAATACGAACACAAA TACCAATACACCACTCATCAACAGCACAATGGTGTACGAAGGCGCCTTGAGCCAAAATGGAGCATCACCATCCATGTATGGCAACGTGTTAGGATCACAC GTTACTGCGGGCATTGTCAGCTTCACAGTTGCAATTTGGCAGTGGCGGCAGCTATTCTAA
AA sequence Show only first row Show all	>Potri.002G020500.1 pacid=42777828 polypeptide=Potri.002G020500.1.p locus=Potri.002G020500 ID=Potri.002G020500.1.v4.1 annot-version=v4.1 MSQRTLLIPLSSFFIAHLLISGVVSTTFTLTNKCGYTVWPGILSNADAPALSTTGFSLQKGESKTITAPASWGGRLWGRTYCSQDSTGKFSCLTGDCGSG KLECSGTGAAPPATLAEFKIDGYGGMDYFDVSLVDGYNLPLLVVPQGGSGQNCTSTGCVVDLNGACPSELKVTSTGGESVACKSACEAFRSPQYCCSGAY GTPDTCKPSSYSEIFKNACPRAYSYAYDDKTSTFTCASADYQITFCPAPNTSQKASQEQNSENTNTNTNTPLINSTMVYEGALSQNGASPSMYGNVLGSH VTAGIVSFTVAIWQWRQLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75800			Pathogenesis-related thaumatin...		Potri.002G020500 [exp]	0	1
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.014G118400 [exp]	2.00	0.9111
AT1G73390			Endosomal targeting BRO1-like ...		Potri.004G067400 [exp]	2.82	0.8851
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Potri.002G150700 [exp]	5.19	0.7741
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.006G055000 [exp]	8.60	0.7594
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.001G321800 [exp]	10.53	0.8776
AT1G72510			Protein of unknown function (D...		Potri.006G219100 [exp]	14.66	0.8399
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.010G150400 [exp]	18.97	0.8447	Pt-GAS1.2
AT3G57810			Cysteine proteinases superfami...		Potri.008G026100 [exp]	19.62	0.8363
AT3G11930			Adenine nucleotide alpha hydro...		Potri.016G064000 [exp]	22.51	0.8028
AT1G02660			alpha/beta-Hydrolases superfam...		Potri.002G197900 [exp]	23.45	0.8149

Compare expression of checked genes

Potri.002G020500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.