Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05670 389 / 5e-138 signal recognition particle binding (.1.2) AT2G18770 357 / 2e-125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G24765 43 / 7e-05 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G17060 42 / 9e-05 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 42 / 0.0001 ATARFB1C ADP-ribosylation factor B1C (.1) AT4G02080 40 / 0.0007 ASAR1, ATSARA1C, ATSAR2 secretion-associated RAS super family 2 (.1) AT3G62560 40 / 0.0007 Ras-related small GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G001600 [exp] 246 / 7e-83 AT5G05670 206 / 2e-67 signal recognition particle binding (.1.2) Potri.018G096077 [exp] 45 / 1e-05 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G171500 [exp] 44 / 2e-05 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 43 / 4e-05 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 43 / 5e-05 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.013G088800 [exp] 42 / 0.0001 AT5G17060 370 / 9e-133 ADP-ribosylation factor B1B (.1) Potri.019G052200 [exp] 42 / 0.0001 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Potri.013G009900 [exp] 41 / 0.0002 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.005G142100 [exp] 40 / 0.0005 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029130 [exp] 398 / 3e-141 AT5G05670 368 / 2e-129 signal recognition particle binding (.1.2) Lus10013031 [exp] 392 / 3e-139 AT5G05670 357 / 2e-125 signal recognition particle binding (.1.2) Lus10030896 [exp] 385 / 3e-136 AT5G05670 350 / 1e-122 signal recognition particle binding (.1.2) Lus10030593 [exp] 385 / 4e-135 AT5G05670 352 / 7e-122 signal recognition particle binding (.1.2) Lus10013024 [exp] 219 / 5e-70 AT2G18770 223 / 2e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009571 [exp] 42 / 0.0001 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10036456 [exp] 40 / 0.0009 AT4G02080 386 / 3e-139 secretion-associated RAS super family 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.002G020900.7 pacid=42779886 polypeptide=Potri.002G020900.7.p locus=Potri.002G020900 ID=Potri.002G020900.7.v4.1 annot-version=v4.1 ATGGAAGGAATAGAGCAGTGGAAAACTGAAGCGCAGCAATGGTTGCAACAGGGGATTGAATATGCGCATCAACTACCTCCTACTCAACTGTACGCGGCTG TCGCTGTCTTGCTTTTCACCACCCTTTTGCTCTTAACAATTCGCTTGCTGAAACGCACAAAATCCAATACCATTGTGCTCTCTGGGCTTAGTGGGAGTGG TAAAACTGTTCTTTTTTATCAACTTCGAGATGGCTCTTCACATCAGGGTACTGTCACCTCAATGGAACCAAATGAGGGCACTTTCTTACTACATTCCGAG AGTGCTAAGAAGGGAAAAATAAAGCCTGTACATGTTGTTGATGTTCCTGGTCATTCTCGTCTTCGACCCAAACTAGACGATTTCTTGCCTCAAGCAGCTG GCATCGTGTTTGTTGTTGATGCTTTGGAATTCTTACCCAACTTGAGTGCAGTTACAGAATATCTGTATGATATTTTGACCAAGGCAAGTGTCGTAAAAAG AAAACTTCCAGTTCTCATCTGCTGTAACAAGACAGACAAAGTGACAGCACATACCAAGGAATTCATCCGAAAACAGTTAGAGAAAGAAATTGAAAAATTG CGGGTATCAAGGAGCGGAGTATCAGATGCTGATATCGCAAATGACTATACTCTTGGAATACCTGGTGAAGTGTTTTCATTCTCGCAATGCATTAATAAAG TTACCATTGGTGAAGCTTCTGGTTTGACTGGCGAGATATCTCAGGTGGAGGAGTTTATTAGAGCACATGTAAAATAA
AA sequence Show only first row Show all	>Potri.002G020900.7 pacid=42779886 polypeptide=Potri.002G020900.7.p locus=Potri.002G020900 ID=Potri.002G020900.7.v4.1 annot-version=v4.1 MEGIEQWKTEAQQWLQQGIEYAHQLPPTQLYAAVAVLLFTTLLLLTIRLLKRTKSNTIVLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFLLHSE SAKKGKIKPVHVVDVPGHSRLRPKLDDFLPQAAGIVFVVDALEFLPNLSAVTEYLYDILTKASVVKRKLPVLICCNKTDKVTAHTKEFIRKQLEKEIEKL RVSRSGVSDADIANDYTLGIPGEVFSFSQCINKVTIGEASGLTGEISQVEEFIRAHVK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05670			signal recognition particle bi...		Potri.002G020900 [exp]	0	1
AT5G01780			2-oxoglutarate-dependent dioxy...		Potri.016G132300 [exp]	2.00	0.7902
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.010G219200 [exp]	3.87	0.7849
AT4G18372			Small nuclear ribonucleoprotei...		Potri.015G138100 [exp]	4.00	0.7633
AT3G25120			Mitochondrial import inner mem...		Potri.002G246000 [exp]	5.74	0.7577
AT3G05100			S-adenosyl-L-methionine-depend...		Potri.005G046300 [exp]	8.36	0.7580
AT3G29130			unknown protein		Potri.011G098200 [exp]	8.94	0.7511
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Potri.001G107200 [exp]	10.34	0.8059
AT5G63905			unknown protein		Potri.014G015866 [exp]	11.22	0.7686
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	13.41	0.7470
AT4G01040			Glycosyl hydrolase superfamily...		Potri.014G096700 [exp]	14.49	0.7226

Compare expression of checked genes

Potri.002G020900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.