Plant FIBer expression Database

Potri.002G021200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30750 39 / 0.001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G021200.1 pacid=42777839 polypeptide=Potri.002G021200.1.p locus=Potri.002G021200 ID=Potri.002G021200.1.v4.1 annot-version=v4.1
ATGGGGGTCTCCAAGTCACGCAAATATTGTATTCTTCTCTATGTTTTTCTCATCTTCCTCGTTTCTTTTATTTGCAACGCACAAGCTTTATCAACAGTTG
CAGATCAGCATGTCCTAGACGTGCCACCAAATGATGAAAATACACCGGCTCGTGCTTCTCCTCCGGTTGCTGCTCCTATTCTAAACAACGTGCCTCCTTT
TGGAAAACCATTAAGCAACCAAGGGCAACAGTCTCCACTGGGTTACCGGCAGCAACAAGAGCTGAATAATCCACCGCAAGACATTAATCAGCCTCGGTCA
AGCCTTACTCAACCACTTTCTTCTCTGAACCAGCCCCTCTCAGGCACTAGTGTGCCCTTTTCTGCTTTGAATCAGCCTTTCGGGGCCAGTGATTCCCAAA
ACTTACTGAGAAACCTTCCTTTTGCCAGTGGAGTTTCTGTGGAGAAAACCTCTACTGATCTGGGAGTCGTTTTATTTCCCCTCATTACATTGATGGCTAC
GCTCTAG
AA sequence
>Potri.002G021200.1 pacid=42777839 polypeptide=Potri.002G021200.1.p locus=Potri.002G021200 ID=Potri.002G021200.1.v4.1 annot-version=v4.1
MGVSKSRKYCILLYVFLIFLVSFICNAQALSTVADQHVLDVPPNDENTPARASPPVAAPILNNVPPFGKPLSNQGQQSPLGYRQQQELNNPPQDINQPRS
SLTQPLSSLNQPLSGTSVPFSALNQPFGASDSQNLLRNLPFASGVSVEKTSTDLGVVLFPLITLMATL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G021200
[exp]
0 1
AT1G26560 BGLU40 beta glucosidase 40 (.1) Potri.010G159900
[exp]
2.64 0.9691 HIUHASE.2
Potri.019G082600
[exp]
2.82 0.9772
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.016G118500
[exp]
3.87 0.9749
AT3G09220 LAC7 laccase 7 (.1) Potri.016G106000
[exp]
6.48 0.9705
Potri.017G046800
[exp]
6.70 0.9706
AT2G36690 2-oxoglutarate (2OG) and Fe(II... Potri.005G185000
[exp]
7.48 0.9605
Potri.016G103700
[exp]
8.24 0.8993
AT3G09220 LAC7 laccase 7 (.1) Potri.016G106100
[exp]
8.48 0.9624
AT2G03360 Glycosyltransferase family 61 ... Potri.010G162100
[exp]
10.95 0.9612
Potri.007G113900
[exp]
11.40 0.9620

Potri.002G021200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.