Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20230 852 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 510 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 485 / 2e-161 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G16860 475 / 1e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01030 472 / 1e-156 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G08070 470 / 4e-156 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 463 / 1e-154 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 466 / 2e-153 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 461 / 4e-153 MEF22 mitochondrial editing factor 22 (.1) AT4G18750 465 / 1e-152 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097000 [exp] 513 / 2e-170 AT4G01030 906 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 506 / 2e-169 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G091600 [exp] 494 / 5e-166 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 489 / 2e-163 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G041200 [exp] 487 / 3e-161 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 483 / 4e-161 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 484 / 8e-159 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 472 / 1e-157 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 478 / 2e-157 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040917 [exp] 496 / 4e-162 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038400 [exp] 478 / 2e-157 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 473 / 2e-156 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028593 [exp] 469 / 2e-156 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 471 / 2e-155 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 481 / 2e-154 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10001220 [exp] 467 / 5e-153 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 456 / 6e-151 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 455 / 1e-150 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018897 [exp] 471 / 2e-149 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.002G021300.1 pacid=42777555 polypeptide=Potri.002G021300.1.p locus=Potri.002G021300 ID=Potri.002G021300.1.v4.1 annot-version=v4.1 ATGGCGGTGGCAGGAGAGCTGTCATGGAGAGCTGTCATGGCTCGGCAAGCACTCCCTCTGTTCGAAAACTTTAGCCACTGCCTTTGTTCAGCCACAAAAG CTTCTTTATCACAAGCACATGCCCACATCCTCAAAACTGGCATTTCACTGCCGGAGACCATTCAAATATTCTCAAAGCTCAATCATTTTGGTCACGTAAT CCGCGTCTTCTCTTACATGCTCACACAAGGTATCGTGCCTGATAGCCGTGTCTTGCCTACTGTCATCAAGACATGTGCTGCGCTATCGGCATTGCAAACC GGAAAACAGATGCATTGTTTTGCATTGGTATCTGGGTTAGGTTTGGACTCCGTTGTCCTGTCCTCTTTATTACATATGTACGTTCAATTCGACCATTTAA AGGATGCTCGCAATGTGTTCGATAAATTGCCTCAACCAGGTGTGGTTACGTCTAGTGCTTTGATTTCGCGTTTTGCGCGGAAGGGGCGTGTAAAGGAGAC AAAGGAGTTGTTTTATCAGACAAGAGATTTAGGTGTTGAGCTTAATTTGGTATCGTGGAACGGTATGATTTCAGGTTTTAATCGTAGTGGCAGCTATCTT GATGCGGTTCTTATGTTTCAAAACATGCACCTGGAAGGATTGAAGCCTGATGGAACCAGTGTTTCTAGTGTGCTTCCAGCTGTTGGTGACTTGGATATGC CGTTGATGGGGATTCAGATTCATTGTTATGTTATTAAGCAAGGTTTAGGACCGGACAAGTTTGTGGTTAGTGCGCTGATTGATATGTATGGTAAGTGTGC GTGTGCTTCTGAGATGTCAGGAGTGTTCAATGAAATGGATGAGGTTGATGTAGGAGCTTGCAATGCTTTAGTTACCGGGCTCTCACGAAATGGACTTGTT GACAATGCGTTGGAGGTATTTAAACAGTTTAAAGGGATGGATCTGAATGTCGTTTCATGGACGTCCATGATTGCCAGTTGCTCTCAGAATGGAAAAGATA TGGAGGCTTTGGAGCTTTTTAGAGAGATGCAGATTGAGGGAGTTAAACCGAACTCTGTAACGATCCCATGCTTGTTGCCGGCTTGTGGAAATATTGCAGC ATTACTGCACGGGAAGGCAGCCCATTGCTTTTCACTTAGAAATGGAATCTTCAATGATGTTTATGTGGGTAGCGCGCTGATTGATATGTACGCTAAGTGT GGAAGAATGCTGGCGTCTAGGCTTTGTTTTGATATGATGCCCAACAGGAACTTGGTTTCTTGGAATTCATTAATGGCTGGGTATGCAATGCATGGAAAGA CTTTTGAAGCTATAAATATTTTTGAATTGATGCAAAGATGTGGGCAAAAGCCTGATCATGTTAGCTTCACTTGTGTATTATCTGCATGCACCCAAGGTGG CTTAACGGAGGAAGGTTGGTTTTATTTTGATAGCATGTCCAGAAATCATGGCGTTGAAGCTAGAATGGAGCATTATTCATGCATGGTGACCCTTCTTGGT CGTAGTGGAAGGCTGGAAGAGGCATATGCCATGATCAAGCAAATGCCATTTGAACCAGATTCTTGTGTTTGGGGTGCTCTACTTAGTTCATGCAGAGTTC ACAACAGAGTGGATTTAGGTGAGATTGCAGCAAAGAGAGTCTTCGAGTTAGAACCAAGAAATCCTGGTAATTACATTCTTCTGTCCAATATTTATGCTTC GAAGGCCATGTGGGTTGAAGTAGATATGGTGAGGGATATGATGAGAAGTAGAGGTTTGAAGAAAAACCCTGGCTACAGTTGGATTGAAATCAAGAACAAA GTGCATATGCTCCTTGCTGGAGACAGTTCCCATCCACAAATGCCCCAAATTATTGAGAAGTTGGCTAAATTGACCGTGGAGATGAAAAAGTCAGGTTATG TTCCACATACTGACTTTGTGCTACAAGATGTGGAGGAGCAGGACAAGGAGCAGATCCTCTGTGGCCATAGTGAGAAGCTGGCGGTAGTGCTGGGGCTTCT AAATACTAAGCCAGGATTTCCGCTTCAGGTTATCAAGAACCTTAGAATCTGTCGTGATTGTCATGCTGTTATAAAATTCATATCCGACTTTGAAAAGAGA GAGATTTTTGTTAGAGACACAAACCGGTTCCATCAGTTTAAAGGTGGAGTTTGTTCTTGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.002G021300.1 pacid=42777555 polypeptide=Potri.002G021300.1.p locus=Potri.002G021300 ID=Potri.002G021300.1.v4.1 annot-version=v4.1 MAVAGELSWRAVMARQALPLFENFSHCLCSATKASLSQAHAHILKTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQT GKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYL DAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLV DNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKC GRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLG RSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNK VHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKR EIFVRDTNRFHQFKGGVCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20230			Pentatricopeptide repeat (PPR)...		Potri.002G021300 [exp]	0	1
AT3G58590			Pentatricopeptide repeat (PPR)...		Potri.019G091000 [exp]	2.23	0.9077
AT1G23450			Tetratricopeptide repeat (TPR)...		Potri.008G212000 [exp]	2.82	0.9193
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.009G067000 [exp]	2.82	0.9090
AT3G22450			Ribosomal L18p/L5e family prot...		Potri.008G153100 [exp]	4.00	0.9190
AT1G50840		PolIA, POLGAMMA...	polymerase I A, polymerase gam...		Potri.011G136900 [exp]	6.63	0.8876
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	10.39	0.9026
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	10.95	0.9141
AT3G02330			Pentatricopeptide repeat (PPR)...		Potri.004G111300 [exp]	11.66	0.8451
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Potri.016G040300 [exp]	12.24	0.8405	Pt-ATGLDH.1
AT4G34360			S-adenosyl-L-methionine-depend...		Potri.004G150200 [exp]	13.03	0.8815

Compare expression of checked genes

Potri.002G021300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.