Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30755 569 / 0 Protein of unknown function (DUF668) (.1) AT1G34320 486 / 4e-165 Protein of unknown function (DUF668) (.1) AT5G08660 412 / 3e-136 Protein of unknown function (DUF668) (.1) AT3G23160 74 / 1e-13 Protein of unknown function (DUF668) (.1) AT5G04550 74 / 2e-13 Protein of unknown function (DUF668) (.1) AT5G51670 72 / 5e-13 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240300 [exp] 990 / 0 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 531 / 0 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 520 / 4e-178 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 438 / 4e-146 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 424 / 6e-141 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 79 / 3e-15 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 79 / 5e-15 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 78 / 7e-15 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 77 / 2e-14 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017260 [exp] 722 / 0 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017259 [exp] 566 / 0 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10013554 [exp] 523 / 0 AT1G30755 416 / 4e-140 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 512 / 4e-175 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028708 [exp] 440 / 2e-147 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 407 / 1e-134 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 395 / 2e-129 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10013553 [exp] 116 / 3e-30 AT1G30755 79 / 1e-17 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 77 / 1e-14 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 76 / 3e-14 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05003 [poplar] [flax] DUF668 Protein of unknown function (DUF668) PF11961 [poplar] [flax] DUF3475 Domain of unknown function (DUF3475)
Representative CDS sequence Show only first row Show all	>Potri.002G021400.1 pacid=42778593 polypeptide=Potri.002G021400.1.p locus=Potri.002G021400 ID=Potri.002G021400.1.v4.1 annot-version=v4.1 ATGGGAGGGGTTTGTCCTGGTGGAACGAAAAGGAAGAATGTGAAGGCTGTGGAGGAGAAGAAAAATAATAGTGGTAACAATACTTCAGGGAAATTAAGGT CATTACACAGTATAGGCAAGAAAAGAGAGAGTCCTTATAGGAATAATAACGGGGATGACTTTCGCAAAACGATGCCAGAGAGGTCGAACTCTGGTGAGTT TTTATCGTCTTTCTCAAGGGAACTTAAGCCATCAACGCCTGCTAGGACAGAGGCCAACAAGATAAATCAAAAGAAGTCATTTTTAGGGAAAGCTGGGACA GTGGGACTGGAGAAAGCAGTGGAAGTCTTGGATACTCTAGGAAGTAGCATGTCAAATTTGAATCCCAGAGGGGGATTTGCCTATGGAATGGGTTCTAGAG GGAACAGGATATCGATATTGGCATTTGAAGTGGCCAATACGATAGCCAAAGGCGCAAACTTGTTTCAATCTCTTTCAGAAAAAAATGTTGAGTTCTTGAA AAAAGAGGTACTACATTCAGAAGGAGTGCACAAGTTGGTTTCTACTGACATGAAAGAGTTGCTCATAATTGCTGCTTCTGACAAAAGAGAGGAATTCGAT GTTTTCTCACGCGAAGTGATTCGGTTTGGAGATTTATGTAAAGACCCTCAATGGCACAATCTGGGTCGATATTTTTCAAAATTGGATTCAGAAAACTCAT TTGAGAGGCAACACAGAACCGAGGCAGAGGTGACAATGCAAGAGCTGACCACTCTGGTGCAGCACACTTCTGAACTATATCACGAGTTGAATGCTTTGGA CAGATTTGATCAAGATTATCAGCGAAAGCTTGATGAAATGCAATCCCTAAATCTCCCCCAAAAAGGAGAAAGTCTCACAATTTTACAAAGTGAGCTAAAA CAGCAAAAAAAGCTTGTAATGAGCTTGAAAAAGAAATCCCTTTGGTCTAAAACTTTGGAGGAGATCATGGAGAAGCTTGTTGATATTGTTACCTTCTTAC AACAAGCGATCTTGGAAGCTTTTGGAAATAATGGTGTTATATTGGCTGACAAGGAAGCTGGCAGGGGTCCTCAAAGACTTGGCACATCTGGTCTTGCATT GCATTATGCTAACATGATCAACCAGATAGATAATATTACTTCTCGACCCACCTCCCTACCTCCTAATACGAGGGACAGTTTGTATCAAGGGATGCCAAAC AGTGTTAAGGCAGCTCTACGCTCACGGTTGCAGATGGTTGATTCCAAGGAAGAGTTCACAATGGCTCTGGTCAAAGGTGAAATGGAAAAGACTCTCCATT GGCTTGCGCCCATTGCCACAAACACGACCAAAGCACATCAAGGCTTTGGATGGGTTGGAGAATGGGCGAACACTGGAAATGATTTCGGCAAGAATACACC CGAAAATACTAACCTGATCCGCCTCCAGACACTCTATCACGCAGATAAGCAGAAGACTGACCTATACATCCTTGAACTAGTGACATGGCTTCACCGGTTG ATAAATTTAGTTAGACAGAGAGATCATGGTTTCTCATCTATGCCTGTTCGATCTCCAGCTCGCAGGGGACTGGTTTTCCGCACCAAGATGCAACGAATTC AATCCCAGAACCACGATGCCCAACTTTGTCAAGAAGATCGAGATTTGTTAGCCAATGCGTGTCAGAGGAGATTGGTCCCAGGAAAAAGCAAAAGTCAGGA ATTTTCTTTAGACAAGAAAAGAGGGCAGGTTTTGACGTTGAGCAGGAGTGCCGGAAACTCACCGGTTAGAAGGTTTGCAGCAAGACAAAAATCAGACCAT CAAAAAACTAATATTATGGATGTTATGGATGGCCTAGATAACACAATATAA
AA sequence Show only first row Show all	>Potri.002G021400.1 pacid=42778593 polypeptide=Potri.002G021400.1.p locus=Potri.002G021400 ID=Potri.002G021400.1.v4.1 annot-version=v4.1 MGGVCPGGTKRKNVKAVEEKKNNSGNNTSGKLRSLHSIGKKRESPYRNNNGDDFRKTMPERSNSGEFLSSFSRELKPSTPARTEANKINQKKSFLGKAGT VGLEKAVEVLDTLGSSMSNLNPRGGFAYGMGSRGNRISILAFEVANTIAKGANLFQSLSEKNVEFLKKEVLHSEGVHKLVSTDMKELLIIAASDKREEFD VFSREVIRFGDLCKDPQWHNLGRYFSKLDSENSFERQHRTEAEVTMQELTTLVQHTSELYHELNALDRFDQDYQRKLDEMQSLNLPQKGESLTILQSELK QQKKLVMSLKKKSLWSKTLEEIMEKLVDIVTFLQQAILEAFGNNGVILADKEAGRGPQRLGTSGLALHYANMINQIDNITSRPTSLPPNTRDSLYQGMPN SVKAALRSRLQMVDSKEEFTMALVKGEMEKTLHWLAPIATNTTKAHQGFGWVGEWANTGNDFGKNTPENTNLIRLQTLYHADKQKTDLYILELVTWLHRL INLVRQRDHGFSSMPVRSPARRGLVFRTKMQRIQSQNHDAQLCQEDRDLLANACQRRLVPGKSKSQEFSLDKKRGQVLTLSRSAGNSPVRRFAARQKSDH QKTNIMDVMDGLDNTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30755			Protein of unknown function (D...		Potri.002G021400 [exp]	0	1
AT1G74360			Leucine-rich repeat protein ki...		Potri.015G061600 [exp]	1.00	0.9317
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014600 [exp]	2.44	0.9212
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.002G170000 [exp]	3.16	0.9035
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	3.46	0.9083
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	3.87	0.9186
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270500 [exp]	4.89	0.8896
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Potri.008G040500 [exp]	6.00	0.8568
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270404 [exp]	7.00	0.8877
AT3G59880			unknown protein		Potri.017G002100 [exp]	7.07	0.8492
AT1G74360			Leucine-rich repeat protein ki...		Potri.012G067600 [exp]	9.38	0.8525

Compare expression of checked genes

Potri.002G021400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.