Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 232 / 1e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G23030 97 / 4e-20 PUB11 ARM repeat superfamily protein (.1) AT1G71020 94 / 2e-19 ARM repeat superfamily protein (.1.2) AT5G42340 89 / 1e-17 PUB15 Plant U-Box 15 (.1) AT1G29340 82 / 2e-15 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT4G21350 76 / 4e-14 PUB8, B80 plant U-box 8 (.1) AT3G46510 77 / 5e-14 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G49780 75 / 1e-13 PUB26 plant U-box 26 (.1) AT2G28830 76 / 2e-13 AtPUB12 PLANT U-BOX 12 (.1) AT3G19380 73 / 8e-13 PUB25 plant U-box 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240100 [exp] 2542 / 0 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 727 / 0 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G220800 [exp] 241 / 3e-64 AT3G06880 1115 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G117300 [exp] 185 / 2e-47 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 165 / 5e-41 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G214100 [exp] 120 / 3e-27 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.001G012300 [exp] 94 / 3e-19 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.002G009900 [exp] 90 / 7e-18 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.008G128600 [exp] 87 / 5e-17 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013551 [exp] 1792 / 0 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 1731 / 0 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034937 [exp] 732 / 0 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023666 [exp] 614 / 0 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036201 [exp] 146 / 4e-35 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038340 [exp] 130 / 4e-30 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023667 [exp] 118 / 4e-27 AT2G28830 84 / 9e-17 PLANT U-BOX 12 (.1) Lus10039197 [exp] 112 / 1e-24 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013745 [exp] 103 / 9e-22 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10043471 [exp] 91 / 5e-18 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.002G021600.2 pacid=42779763 polypeptide=Potri.002G021600.2.p locus=Potri.002G021600 ID=Potri.002G021600.2.v4.1 annot-version=v4.1 ATGGCAGGAAGCTATGGGTTTGCAATGGACCAAAAGGATATTGTGAGTTTATTGATTACCACAGTGGGAAGTTTCATACAAGATCGCTTGGTCAGTAAAG AGCAAAGAACCCAGCACAAAGAACAGTGTGCTGAGAGATTAGCAGCTGAAGATGGGAGCTGTGATAAAGATACCGAGGTTCTATACTCTGATCAAGCAGT ATTAGCAAATTTGGATTGGGGTATTGAAGCCCTTGAAGAAGCCATCGACACCTCCAACACGGAGACTAAGCTGGCACGATTAGATCATGCAGAGAAGATG CTGCAAGTTTGTGCCATGTTGAACTCTTACCAAAGAACAGCTGGAGTCCCCAATTTCTATCTCTCTGCTTGGGCCCACCTCTACCTTTCGTACCTATGGA ATTTGCGTAACAATACTGAGAATTCTGTTCTTCATGTCCTTGAGATGTTTATTGTTGATCCCTTCTTCTCAAGAATTGATTTTGCCCCTGAACTCTGGAA AGATCTTTTTCTTCCGCATACGAGCTCTATTGTTGGATGGTATTCCGAGGCTAGACAGAGGCTTATGATGGAAGTAATTCCCGATTCTTCAGATTTGTCA TTTACTGCTAACTTGGATCAGTTCTTCAATGAGTCTTTGATATATTCAATGAGGCCGGATCAGGTGGAAAAATTACAGAAGCTGGAGGAGCTTTACAGAG AATCCTTAGACGAGAAAACACGGCTTTTTGCTAAATACTACAAGGATTGCATGAATTCGGATTCAACAGCAAGAAAGAAGATGGTTCCAATGTTTCCAAT AGCAGAGCCTCCAGTGACTCCTCTGCATGAGGTTAGCCGGTCTATTCCTGACTACGTGAAATTTGGTCCCATCTTGCCTCATAGTGCTGGTTTCTCTCCA GTTCTTAGATTTAAACATGCTGCGAAAGCAGAAAGCAGATTGGGCATAATCTCGAGCCTCTCACCTAATTTAGAGGAGTCGTCTGCTACGTGTGATCCTC CTCCAGAGGGCAAGCCTGAGGACAGAGAAAATGATTCTGATTGCGAGCCGAGTGATACTTATTTTGATTCTGAAGATAAAAATCACAAGTTAACAACTCT TCCCAGCATAAAATCAACCGAAAATAAGGACATTGGAGTGAGCAAACGGCCATCTAAAGCAAAGAGCCAAAAGCATTCTCCCAAAATATGCTCTCCTATG GATTCCCCAAGAATTTCACCAAAGATCATTTCTCCTAATTCAGTTGTCCAGTCTAAAAGAGAACCCAAAACAATATTACGGATTCTTTCATGCCGTGCTA TGGATTCTGCTATTGCTACCTCTTTACCTGATTCTCCATGCATGAGCAAGGAACACGGCAGTAGCTCACCAGACTCGGATGGTGAAGTGATAGGTCTGCT GAGAAATGTCAGGAAGAACCGTGATCGAACAAGGAGAATGAGTTGTGACAACGTGAGCGGCCAAATATTTGAGAATAGCTCTCTCATTCAGAGTGATGAA GGAAGAGAGAGCTGCATTTCACTGCCTACATCTGAGAAGTTGACTCCCCGTTCAAGACCACGAAAAGATTTTGTTTGCCCTATCACAGGAAAGCTTTTGA ATGACCCAGTTACCCTTGAAACCGGAGAGACCTATGAGAGAGAAGCAATTCAAGAATGGATAAAAAGAGGAAACACAACATGCCCTATTACCCGCCAACC TCTCTCCGCAGATTCACTGCCCAAAACAAATTATGTTTTGAAGAGACTAATAACATATTGGAAAGAGCAGCATCCCGAGTTTGCTCAGGAATTTTCGTAC TCTGAAACACCAAGGAACTCATCCACAAGAGAGACTTCTTTGGTGTCTAATCCTAGAAGAACATTTTATTCTTACGGTCGCAACAGCACAGAATGTCACA CGCAGCAGAGGAGCAAAAGATTTGTCCGAACAGCAGTATCCACATCACCAACTAGTGAAATTTCTCAAGCTACAATTGAAACAATCGTCAATGGGTTGAA ACCTTATATTTCATGTCTCTGTACTTCAGAAAACTTAGAAGAAAGGGAAGCAGCAGTTTCAGCAGTAGCCAAATTGTGGAAGGACTCAAAGGGTGATCCT GCAGTTCTTACATTTTTATCTAAGCCAACGTTTGTAAATGGGATTGTAGAAATACTATCAGCTTCTGTAAACAGAGATGCTCTTAAAACTTCAATTTACA TTCTCTCTGAGCTAACATTTTTGGATGAAAGTGTTGGAGAGATTCTTACCAGTGTAGATTATGATTTTGATTGCCTAGCCGCTTTGTTAAAAAATGGGCT TGCTGAGGCTGTTGTTCTGATATACCAACTGAGGCCAGCATTTGCTCAGCTTTCGGCTCACAACTTTATACCCTCACTTGTCCAGTTAATCCAGAGTAAA AGTGAAGATTTGGATGATCTTCACTTTGCAATAGAGCCCAAGGATGCTGCTATAGCAGTGCTTGAACAGATACTTACTGGTGGGGATGAAAACAGCCAGT CTGTCAGTGCTTTTGCTGTTATTCGTGCAAATGGAATTCCAGCTCTGGTCAAGTGTTTGGATAGAGTGGAAGGAAGATGGTCAATTGTTTCAATACTTCT CTGTTGCATGCGTGCTGATAGAAGTTACCGGAACTTTATAGCAAGTACAGTCGAACCATCTCCTGTGCTTGAATTATTTCTTTCAGGAAATGATAATGTG CGAGGCTTATGTATTGACTTCCTGTCTGAGCTAGTTCACTTAAGCAGGAGGACAACCTGTAACCAGATCTTGCAGATAATTAAAGAAGGAGGAGCATTTA GTACCATGCACACCTTTCTTGTTTATCTCCAAATGGCTCCCATGAAGCACAAACCTTCCCTTGCCACTCTTCTTCTTCAGCTTGATCTCCTGGCTGAGCC ACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGGCGTTAATTGAAGCACTGCACAGAAAGGAATTCTCTAATTCTCAAATGATGGCTCTGGATGCT TTAGGATCTCTTTCTGCACGCAGGACTTCATCTGGGGATCTTTACATGGAAACCTGGTTACTGAAGATTGCAGGGTTTGACCAACCTTACAATGCTTTGA TGAAGCCAGAGAAGCTGACGAAGAATGAAAATGATTTAGCAGAAACAAATTTAGCCGAATCAATGGAAGATGAAGAGAGAGCAGAAAGTTCTTGGGAGAA AAGAGTAGCTTTTGTCCTTTGCAATCATGAAAAGGGCTCTATCTTTAAAGCTTTACAGGAATGCTTCAAGAGTAATTCCTTAGAGACTGCAAAGTCATGC CTTGTGATTTCCACATGGCTCATATACATGCTTTCAGTTCTTCCTGACACTGGTGTAAAAAGTGCTGCTCGTGAATCCTTGCTTGAGGAATTAATTAATG TCCTTCAATCATCTAGAAATATGGAAGACAAGATTTTGTCAACCCTTGCATTAAGAACTTTCGTAAGCGACCCAGCTGCACTTGAAGCGCTTGGGAAGTA TGCTAAATGCATCTACAGAACCTTGAGAAAACTTAAGCGAAGTTCACCAGTGGTCACTGATGTACTGAAATCTTTAATGAAAATGTCTTCTGTCAATGCA ACAGAGTTGTGGAATTGTACCGAAGTGGTTGAGGTAGATTCATGTGTCAATGGCAAATTGCTGTCTTTGCTTCATTTGGAAGGTCGTGTTATTAGCAGCC ATTCCGACGGAACCATAAAGGTGTGGGATGCTGGAAAGAGGGTTCTAAGGTTAATTCAAGAAGTTCGTGAACATACAAAAGCTGTCACATGCCTGTATAT TCCATCTTCAGGAGACAAATTGTACAGTGGTTCCTTGGACAAAACAATTCGGGTTTGGGCAATCAAACCTGAAGAAATTCGTTGTATTCAGGTTCACGAT GTGAAGGAGGCAGTTTACGAGCTGGCAGCTAATGATAAAGTTGCATGCTTTGTTTCTCAAGGACCAGGAGTTAAGGTGTACAGCTGGTCAGATGTTCCAA AGCACATAAACTTCAACAGAACCGTGAAGTGCCTTGCCATGACAGGGGATATATTATATTGTGGTGCCTCTGGTTACAGTATCCAAGAGGTGGATCTGAG CAAATTCACATCAACAACTTTCTACTCGGGAACAAGAAAAATGTTGGGGAAACAAAGTATTTATTCCCTACATGTTCAAGATGGTCTTCTGTTTGCTGGT GGTTCAGCAGTTGATGGGACAGCAGGGAAGGTATTTTGTCACACGAGCAAGGCTGTAACAGGATCCTTCCCAACTGGGTTCGACATTCTGCGGATTTCAG TCAACGGCGACTTCATATTCACAGCCACGAGAAGTGGGACCATTGAGGTTTGGTTGAGAGAGAGAGTTACAAGGGTTGCCTCCATCGAAGTCGGCGGCGG GGGACACACAAGAGTTACATGCTTGGCATCAGATATGGATGGAGGAATGCTTTATGCCGGTACTTCTGATGGCAAGATACAGGCTTGGGCGTTGGACTAG
AA sequence Show only first row Show all	>Potri.002G021600.2 pacid=42779763 polypeptide=Potri.002G021600.2.p locus=Potri.002G021600 ID=Potri.002G021600.2.v4.1 annot-version=v4.1 MAGSYGFAMDQKDIVSLLITTVGSFIQDRLVSKEQRTQHKEQCAERLAAEDGSCDKDTEVLYSDQAVLANLDWGIEALEEAIDTSNTETKLARLDHAEKM LQVCAMLNSYQRTAGVPNFYLSAWAHLYLSYLWNLRNNTENSVLHVLEMFIVDPFFSRIDFAPELWKDLFLPHTSSIVGWYSEARQRLMMEVIPDSSDLS FTANLDQFFNESLIYSMRPDQVEKLQKLEELYRESLDEKTRLFAKYYKDCMNSDSTARKKMVPMFPIAEPPVTPLHEVSRSIPDYVKFGPILPHSAGFSP VLRFKHAAKAESRLGIISSLSPNLEESSATCDPPPEGKPEDRENDSDCEPSDTYFDSEDKNHKLTTLPSIKSTENKDIGVSKRPSKAKSQKHSPKICSPM DSPRISPKIISPNSVVQSKREPKTILRILSCRAMDSAIATSLPDSPCMSKEHGSSSPDSDGEVIGLLRNVRKNRDRTRRMSCDNVSGQIFENSSLIQSDE GRESCISLPTSEKLTPRSRPRKDFVCPITGKLLNDPVTLETGETYEREAIQEWIKRGNTTCPITRQPLSADSLPKTNYVLKRLITYWKEQHPEFAQEFSY SETPRNSSTRETSLVSNPRRTFYSYGRNSTECHTQQRSKRFVRTAVSTSPTSEISQATIETIVNGLKPYISCLCTSENLEEREAAVSAVAKLWKDSKGDP AVLTFLSKPTFVNGIVEILSASVNRDALKTSIYILSELTFLDESVGEILTSVDYDFDCLAALLKNGLAEAVVLIYQLRPAFAQLSAHNFIPSLVQLIQSK SEDLDDLHFAIEPKDAAIAVLEQILTGGDENSQSVSAFAVIRANGIPALVKCLDRVEGRWSIVSILLCCMRADRSYRNFIASTVEPSPVLELFLSGNDNV RGLCIDFLSELVHLSRRTTCNQILQIIKEGGAFSTMHTFLVYLQMAPMKHKPSLATLLLQLDLLAEPRKMSIYREEAVEALIEALHRKEFSNSQMMALDA LGSLSARRTSSGDLYMETWLLKIAGFDQPYNALMKPEKLTKNENDLAETNLAESMEDEERAESSWEKRVAFVLCNHEKGSIFKALQECFKSNSLETAKSC LVISTWLIYMLSVLPDTGVKSAARESLLEELINVLQSSRNMEDKILSTLALRTFVSDPAALEALGKYAKCIYRTLRKLKRSSPVVTDVLKSLMKMSSVNA TELWNCTEVVEVDSCVNGKLLSLLHLEGRVISSHSDGTIKVWDAGKRVLRLIQEVREHTKAVTCLYIPSSGDKLYSGSLDKTIRVWAIKPEEIRCIQVHD VKEAVYELAANDKVACFVSQGPGVKVYSWSDVPKHINFNRTVKCLAMTGDILYCGASGYSIQEVDLSKFTSTTFYSGTRKMLGKQSIYSLHVQDGLLFAG GSAVDGTAGKVFCHTSKAVTGSFPTGFDILRISVNGDFIFTATRSGTIEVWLRERVTRVASIEVGGGGHTRVTCLASDMDGGMLYAGTSDGKIQAWALD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	0	1
AT2G21840			Cysteine/Histidine-rich C1 dom...		Potri.019G020100 [exp]	1.41	0.8425
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.008G140700 [exp]	3.16	0.8208
AT1G80870			Protein kinase superfamily pro...		Potri.001G043700 [exp]	6.48	0.7673
					Potri.013G135900 [exp]	9.21	0.6734
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G003950 [exp]	9.38	0.7871
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	9.48	0.7903
AT1G15890			Disease resistance protein (CC...		Potri.001G172300 [exp]	9.79	0.7765
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Potri.003G049600 [exp]	9.79	0.7349
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.010G153800 [exp]	13.26	0.7961
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.005G069800 [exp]	13.41	0.7245

Compare expression of checked genes

Potri.002G021600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.