Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42470 509 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240000 [exp] 701 / 0 AT5G42470 504 / 8e-180 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033139 [exp] 585 / 0 AT5G42470 490 / 3e-174 unknown protein Lus10034533 [exp] 576 / 0 AT5G42470 480 / 6e-170 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06113 [poplar] [flax] BRE Brain and reproductive organ-expressed protein (BRE)
Representative CDS sequence Show only first row Show all	>Potri.002G021700.1 pacid=42776793 polypeptide=Potri.002G021700.1.p locus=Potri.002G021700 ID=Potri.002G021700.1.v4.1 annot-version=v4.1 ATGCCATTTGATGGATTCTCTCCTCTCATCTCGTCTCAACTCCAGTACCTCCTCAATCACTTCCCTCACACGATCCAGATTGAGCAGGCTTGGTCAGGCA CCAGATACTTTCCTGGAAGTCTTGATCGATTCACATTGCTCATTCCCTACTGTCTAGACTACATAAAATGGGATATTATATACAATGCTGAATTTCCATT AGCTGCGCCGGATGTTATATTTGGTCCCGAGGATGATGGTTTCCATCCATTTATTGTCGTAGGAAGAGAGGAAGGGGATTCGAGGCTCGTTAAGAACAGT TTGACTGATTGGAACAATAAAGATCCTTCACGGCTGTTGGCTCTCGTAATGGAATTGAGGGATAAATATAGGTCTTACCAGGAGAGACGCGTGGGAGAAG TTGATGATGATAGGTTGAAGTTTGAAATTAGTACTATTGTATCTAGGGAGGGAATTGAAATGCATATGAGTTCTGGTGTTGAAAAGCCAGGGGAGGTTAA ATTTGCTGTGCCTTTAATGGACATGAATATAAATAAAATGGTGCTTGGATGCCCCTGGAGTCATCCACAAAAGATATACTTACAGGTTATTTATCCTGTT GGTAGAAAGTATGCACCTGCTACTTCAGCACCTCGTCTGAAATTAATGTGCACTCCTGAGTTGAAAGCCCTGTTTTCTATTGATGAAGTCAAACTTCCTG CATGGTTGGATGGAATGTGCATGGCTGAATATCTTCCCCACCTGGAAGAACTCCTTCAGAGACAGGTCTTAGAGGCAGTTACGTTAATTGATGTTAGAAG GCAGTTTATCGAGGCATTATCTCCAGTAATTGGAAGGCCGCTAGAAGCTGATCCAGTTTTTTGCAGAAAGGCTTCATTTCTTGTCTGTTCTGGACCATTT ACATTCCTGGTGCATTTTTTCCTCTCAACTCAGTTTCCAAAACAGCGGCCTTCTCTAATGTTTCAAAGTATTCAGCATTTCAATTCCCTTGGCATCCCGG TCAAGTCACCTCTGATTACAGAGTATCTATGGAGTCCTAGATGGGAACCCTCACAAATGGCTGAGCGGATCTCTGACTTTTTGGTGGATGAATCTCTAAA TTTCAAAAGGCACTGCAACGAATCTCAACTTCAACACTAG
AA sequence Show only first row Show all	>Potri.002G021700.1 pacid=42776793 polypeptide=Potri.002G021700.1.p locus=Potri.002G021700 ID=Potri.002G021700.1.v4.1 annot-version=v4.1 MPFDGFSPLISSQLQYLLNHFPHTIQIEQAWSGTRYFPGSLDRFTLLIPYCLDYIKWDIIYNAEFPLAAPDVIFGPEDDGFHPFIVVGREEGDSRLVKNS LTDWNNKDPSRLLALVMELRDKYRSYQERRVGEVDDDRLKFEISTIVSREGIEMHMSSGVEKPGEVKFAVPLMDMNINKMVLGCPWSHPQKIYLQVIYPV GRKYAPATSAPRLKLMCTPELKALFSIDEVKLPAWLDGMCMAEYLPHLEELLQRQVLEAVTLIDVRRQFIEALSPVIGRPLEADPVFCRKASFLVCSGPF TFLVHFFLSTQFPKQRPSLMFQSIQHFNSLGIPVKSPLITEYLWSPRWEPSQMAERISDFLVDESLNFKRHCNESQLQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42470			unknown protein		Potri.002G021700 [exp]	0	1
AT5G13610			Protein of unknown function (D...		Potri.010G216300 [exp]	1.41	0.7052
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.011G040900 [exp]	3.46	0.6767
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Potri.014G071800 [exp]	9.79	0.6687
AT5G45460			unknown protein		Potri.006G013600 [exp]	10.24	0.6632
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.005G051100 [exp]	12.00	0.6855
					Potri.001G137000 [exp]	17.60	0.6357
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.007G007100 [exp]	21.16	0.6426
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.013G077500 [exp]	24.81	0.5719
AT5G62620			Galactosyltransferase family p...		Potri.010G040400 [exp]	32.24	0.6423
AT5G08770			unknown protein		Potri.005G069900 [exp]	34.98	0.6592

Compare expression of checked genes

Potri.002G021700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.