Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20010 837 / 0 TUB5 tubulin beta-5 chain (.1) AT1G75780 835 / 0 TUB1 tubulin beta-1 chain (.1) AT5G12250 833 / 0 TUB6 beta-6 tubulin (.1) AT5G62700 826 / 0 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 826 / 0 TUB2 tubulin beta chain 2 (.1) AT4G20890 825 / 0 TUB9 tubulin beta-9 chain (.1) AT5G23860 824 / 0 TUB8, b-TUB tubulin beta 8 (.1.2) AT5G44340 822 / 0 TUB4 tubulin beta chain 4 (.1) AT2G29550 820 / 0 TUB7 tubulin beta-7 chain (.1) AT5G19780 364 / 2e-122 TUA5 tubulin alpha-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G239900 [exp] 864 / 0 AT1G20010 840 / 0.0 tubulin beta-5 chain (.1) Potri.011G162500 [exp] 843 / 0 AT5G23860 847 / 0.0 tubulin beta 8 (.1.2) Potri.001G464400 [exp] 843 / 0 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1) Potri.003G125400 [exp] 827 / 0 AT5G23860 857 / 0.0 tubulin beta 8 (.1.2) Potri.001G272700 [exp] 827 / 0 AT5G62700 849 / 0.0 tubulin beta chain 3 (.1) Potri.001G272800 [exp] 827 / 0 AT5G62700 857 / 0.0 tubulin beta chain 3 (.1) Potri.016G033200 [exp] 827 / 0 AT5G12250 862 / 0.0 beta-6 tubulin (.1) Potri.001G106100 [exp] 826 / 0 AT5G23860 858 / 0.0 tubulin beta 8 (.1.2) Potri.015G038800 [exp] 826 / 0 AT5G12250 849 / 0.0 beta-6 tubulin (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021094 [exp] 840 / 0 AT1G75780 857 / 0.0 tubulin beta-1 chain (.1) Lus10023348 [exp] 838 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10038458 [exp] 838 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10017217 [exp] 837 / 0 AT1G75780 854 / 0.0 tubulin beta-1 chain (.1) Lus10036069 [exp] 829 / 0 AT5G12250 914 / 0.0 beta-6 tubulin (.1) Lus10026813 [exp] 828 / 0 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10016448 [exp] 827 / 0 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10040712 [exp] 827 / 0 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10039231 [exp] 820 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10027476 [exp] 820 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G021800.1 pacid=42776905 polypeptide=Potri.002G021800.1.p locus=Potri.002G021800 ID=Potri.002G021800.1.v4.1 annot-version=v4.1 ATGAGAGAGATCCTTCATATTCAAGGAGGCCAATGCGGTAACCAAATCGGTGCCAAATTCTGGGAAGTTATATGCGACGAGCACGGAATCGATCAAAACG GAAAGTACTCCGGCGACGCGGCGTCTTCTGATCTTCAACTGGAAAGGATCAATGTGTATTACAATGAAGCTTCAGGTGGAAAATATGTGCCGAGGGCGGT CCTTATGGATCTTGAACCGGGTACTATGGAGAGTATTAGATCCGGTCCGTATGGACAGATCTTTAGACCTGATAATTTTGTGCATGGACAGTCCGGCGCT GGTAATAATTGGGCTAAAGGTCATTACACTGAAGGAGCTGAGCTGATTGATGCTGTTCTTGACGTTGTCAGAAAAGAGGCTGAGAATTGTGATTGCTTGC AAGGCTTTCAGGTGTGCCACTCGCTTGGAGGTGGTACAGGTTCTGGCATGGGAACACTTCTAATTTCAAAGATCCGAGAGGAATATCCTGACAGGATGAT GCTTACATTCTCTGTTTTCCCTTCACCAAAGGTCTCGGACACGGTTGTGGAGCCATATAATGCTACCCTCTCAGTGCATCAGTTGGTAGAGAATGCTGAC GAATGCATGGTTCTTGACAATGAAGCACTGTATGACATATGCTTCCGGACTCTAAAGCTTAGCACTCCAAGCTTTGGTGACCTTAACCATTTGATCTCTG CAACTATGAGCGGTGTAACTTGCTGTCTGAGGTTCCCTGGTCAGCTCAACTCTGACCTTCGCAAGCTGGCTGTAAACCTGATCCCATTTCCCCGTCTTCA CTTCTTCATGGTAGGGTTTGCACCACTCACATCTCGTGGTTCCCAGGGGTATATCTCCCTCACTGTCCCAGAGCTGACCCAGCAGATGTGGGATTCTAAG AACATGATGTGTGCTGCTGACCCCCGCCATGGCCGCTACTTGACAGCCTCAGCCATGTTCAGGGGCAAGATGAGCACCAAAGAGGTGGATGAACAGATGA TTAATGTGCAGAACAAGAATTCATCATATTTTGTGGAGTGGATTCCCAACAATGTGAAGTCTAGCGTGTGTGATATTGCACCAAAAGGTCTGACGATGGC ATCGACTTTTGTGGGGAACTCCACGTCAATCCAGGAGATGTTCAGGAGGGTGAGTGAGCAGTTCACAGCCATGTTCCGTCGCAAGGCCTTCTTGCACTGG TATACTGGGGAAGGGATGGATGAGATGGAGTTCACTGAAGCAGAGAGCAACATGAACGATCTCGTGGCAGAGTACCAGCAATACCAGGATGCAACAATTG AGGAAGATGGTGAATATGAGGAGGAAGGTGAAGAGAACTATGATGCCTAG
AA sequence Show only first row Show all	>Potri.002G021800.1 pacid=42776905 polypeptide=Potri.002G021800.1.p locus=Potri.002G021800 ID=Potri.002G021800.1.v4.1 annot-version=v4.1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDQNGKYSGDAASSDLQLERINVYYNEASGGKYVPRAVLMDLEPGTMESIRSGPYGQIFRPDNFVHGQSGA GNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENAD ECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQGYISLTVPELTQQMWDSK NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPKGLTMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHW YTGEGMDEMEFTEAESNMNDLVAEYQQYQDATIEEDGEYEEEGEENYDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.002G021800 [exp]	0	1
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.006G063000 [exp]	3.46	0.9106	AVP.5
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.003G120000 [exp]	3.46	0.9210
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144241 [exp]	4.58	0.9286
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Potri.003G038700 [exp]	6.32	0.9052
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.004G043900 [exp]	6.48	0.9071	NSF.1
AT1G76550			Phosphofructokinase family pro...		Potri.005G257800 [exp]	8.00	0.9235
AT1G33490			unknown protein		Potri.013G095200 [exp]	10.09	0.9074
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.006G077900 [exp]	10.24	0.9080	PBA1.2
AT5G18400			Cytokine-induced anti-apoptosi...		Potri.005G198900 [exp]	10.72	0.8795
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.016G033200 [exp]	11.61	0.8895

Compare expression of checked genes

Potri.002G021800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.