Plant FIBer expression Database

Potri.002G021900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G239800
[exp]
372 / 2e-128 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G021900.1 pacid=42778856 polypeptide=Potri.002G021900.1.p locus=Potri.002G021900 ID=Potri.002G021900.1.v4.1 annot-version=v4.1
ATGGCATTCAGGCATGGTTACTGTACTCTTTACGATGAGTTTGGAGATGATGAAATCGAGGTTGCTGAAATCTTGTCAAGTTTCCCTCGTTTAATTGCTA
TGTCTAAGTATAGTTCTTGGCTTTCATACACATGGGGTGGTAAAAGGAGGAGATCCGCGGAGGCCAATTTGGGTCCACGACCCGCCGTTCAATCACCACC
AACATCAGTATCACCTTCGCCGCCACCGATTTTATCTGGTTCCGTGGGTCCTGCTATTACTACTAACACTACTCGTATTGCTGCCTCTGAACCTGAGAGA
CCCATCATCGTCAAAGTTGAACCGGCGACTAGCCCTGCAACACCTCTTTCTTTCTTTCCTAGTGAATCTGACGAGAGGCCTAAGCGCTCGAACAGGAAAG
TCTATACTAAAAAGAGAAGAGAGGATTTGCTGAAGATTAAAAGCCAACTTACTAAGAGCAATGAATTGCTAACAGGGGAGATACAAATGGTGACTCGACA
TCATGATCAATTGAAAGCTAGTAATTCATGGTGGATAGCAAGGAAACAAGAGCTAACCATGGGTGTTATTAAAAGAGAAGATCAGTTGAATCTTCTACGA
ATGGATTTAGGCCAAGAAACTGTTAAATGTCCTGATCATGTTGTTGATGATCAAGCTCATCTTTCTCTGCGCGTGCCCGGCATCACATTTTATCAGCAGC
AACCATTTATGCTAGATAAGAATGCCAACAATCAAGAAATGGGCTGCAACTATCCAAACCCTTATGGCCAAAGAAGAGTGTCCCTGTTCCCATCTACGAC
TTCTAGTACCAGTGATGATTTTGGCCCACGTAGCATCCCTGATCTCAATCTAACTATCGGGCAGCCTGCTTGGATGGACTCTGAAGTTAAACAACTGGTT
GATGACAAGAGTACTGTGGTTAATGGGGCCATTGTGGGTACTGTGGTTAATGGGGCCATCACTGTCAGGAGTATTAATAAGGCCATCGCTGCTCAGGCAA
GACGAAGAAGGATGCTCATTTGCAAGAAGAAGCTTTCTAATGTCTCCAGTAAATTACGATTCCCACTTTGA
AA sequence
>Potri.002G021900.1 pacid=42778856 polypeptide=Potri.002G021900.1.p locus=Potri.002G021900 ID=Potri.002G021900.1.v4.1 annot-version=v4.1
MAFRHGYCTLYDEFGDDEIEVAEILSSFPRLIAMSKYSSWLSYTWGGKRRRSAEANLGPRPAVQSPPTSVSPSPPPILSGSVGPAITTNTTRIAASEPER
PIIVKVEPATSPATPLSFFPSESDERPKRSNRKVYTKKRREDLLKIKSQLTKSNELLTGEIQMVTRHHDQLKASNSWWIARKQELTMGVIKREDQLNLLR
MDLGQETVKCPDHVVDDQAHLSLRVPGITFYQQQPFMLDKNANNQEMGCNYPNPYGQRRVSLFPSTTSSTSDDFGPRSIPDLNLTIGQPAWMDSEVKQLV
DDKSTVVNGAIVGTVVNGAITVRSINKAIAAQARRRRMLICKKKLSNVSSKLRFPL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G021900
[exp]
0 1
AT4G33350 AtTic22-IV translocon at the inner envelo... Potri.014G030000
[exp]
6.78 0.8597
Potri.004G019733
[exp]
14.31 0.8893
AT2G20540 MEF21 mitochondrial editing factor ... Potri.001G471600
[exp]
27.54 0.8711
AT1G10657 Plant protein 1589 of unknown ... Potri.010G042300
[exp]
28.00 0.8749
AT1G51100 unknown protein Potri.011G132900
[exp]
29.24 0.8805
AT1G55370 NDF5 NDH-dependent cyclic electron ... Potri.019G034000
[exp]
37.01 0.8755
AT5G09650 ATPPA6 pyrophosphorylase 6 (.1) Potri.009G081200
[exp]
56.20 0.8551
AT3G16190 Isochorismatase family protein... Potri.003G051700
[exp]
83.41 0.8401
AT1G18010 Major facilitator superfamily ... Potri.012G005100
[exp]
127.73 0.8049
AT5G01220 SQD2 sulfoquinovosyldiacylglycerol ... Potri.006G097600
[exp]
181.89 0.8039

Potri.002G021900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.