Plant FIBer expression Database

Potri.002G022100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034527
[exp]
52 / 3e-09 AT5G19875 52 / 2e-09 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G022100.1 pacid=42779603 polypeptide=Potri.002G022100.1.p locus=Potri.002G022100 ID=Potri.002G022100.1.v4.1 annot-version=v4.1
ATGGCTTGGCTGTTGAAACATACAAGGGGGCCTGCATGGAAGCAAGAGTGGACACAGCGTACTCTAGCCTCCTTGTCTCTACCTCCTTTCCCCTTAGTTG
CTATTTTCTTTATAATTATTCTCCTCCTGTCTGTATCATCATTTATGAGCTACAAGAACCAGATGCAGCACGCACTGATCAACTTCAAGTTGCTACTCTT
GTTCTTGCCTGTGCTCCTGATATTTCTGGCTATGTTTGCGTCTAAGGTTGAGACCTTCATGTTTCCCAACACAAAAGCACAGTATGGCTCGGCGGATAAT
AGGAGTTGGAACTTGCCTTGGGGATTGGCGGTGTTGGTGGTGGTGCTTCTGGTGATGGTAAATTATAGGTCTTCTTTTCAGTCCATGTGGTCTCCAATTG
TATGGAGGTCCGTTTAG
AA sequence
>Potri.002G022100.1 pacid=42779603 polypeptide=Potri.002G022100.1.p locus=Potri.002G022100 ID=Potri.002G022100.1.v4.1 annot-version=v4.1
MAWLLKHTRGPAWKQEWTQRTLASLSLPPFPLVAIFFIIILLLSVSSFMSYKNQMQHALINFKLLLLFLPVLLIFLAMFASKVETFMFPNTKAQYGSADN
RSWNLPWGLAVLVVVLLVMVNYRSSFQSMWSPIVWRSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G022100
[exp]
0 1
AT3G51680 AtSDR2 short-chain dehydrogenase/redu... Potri.006G206400
[exp]
1.00 0.9574
Potri.002G250900
[exp]
1.41 0.9550
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.005G142100
[exp]
2.82 0.9451 Pt-ARF1.5
AT3G10600 CAT7 cationic amino acid transporte... Potri.010G241000
[exp]
3.46 0.9294 PtrCAT10,Pt-CAT6.3
AT5G54660 HSP20-like chaperones superfam... Potri.011G131800
[exp]
3.87 0.9066
AT5G21910 unknown protein Potri.006G220500
[exp]
5.09 0.9098
AT4G13400 2-oxoglutarate (2OG) and Fe(II... Potri.018G076700
[exp]
6.63 0.9153
Potri.004G226200
[exp]
6.92 0.9138
Potri.010G132000
[exp]
7.48 0.9191
Potri.008G114101
[exp]
8.36 0.9228

Potri.002G022100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.